contig_metadata
24 rows where analysis = "blastn", bioproject = "PRJNA1074408" and tax_phylum = "Bacillota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 4017524 | 4017524 | PRJNA1074408_S_NODE_3724_length_239_cov_1.709184_g3594_i0 | PRJNA1074408 | 3724 | 239 | 1.709184 | 4.08494976 | Weissella soli | 155866 | Bacteria | Bacteria | 420 | 5.11e-113 | NTclustered | gi|1721182056|gb|CP042377.1| | 155866 | g3594 | i0 | 98.326 | 541.129707112971 | 239 | 4 | 100 | 0 | 1 | 239 | 61161 | 61399 | Weissella soli strain CBA3633 chromosome | blastn | 129330 | 420 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Weissella | Weissella soli | ||
| 4017536 | 4017536 | PRJNA1074408_S_NODE_6144_length_187_cov_2.965278_g6014_i0 | PRJNA1074408 | 6144 | 187 | 2.965278 | 5.54506986 | Staphylococcus epidermidis | 1282 | Bacteria | Bacteria | 309 | 8.6e-80 | NTclustered | gi|2866787960|gb|CP064471.1| | 1282 | g6014 | i0 | 99.412 | 482.850267379679 | 170 | 1 | 91 | 0 | 18 | 187 | 2324683 | 2324514 | Staphylococcus epidermidis strain UMCG387 chromosome, complete genome | blastn | 90293 | 309 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus epidermidis | ||
| 4017537 | 4017537 | PRJNA1074408_S_NODE_6324_length_185_cov_1.204225_g6194_i0 | PRJNA1074408 | 6324 | 185 | 1.204225 | 2.22781625 | Peptoniphilus lacrimalis | 33031 | Bacteria | Bacteria | 342 | 8.369999999999999e-90 | NTclustered | gi|2812796007|gb|CP165621.1| | 33031 | g6194 | i0 | 100 | 260.324324324324 | 185 | 0 | 100 | 0 | 1 | 185 | 325648 | 325464 | Peptoniphilus lacrimalis strain F0141 isolate D048 chromosome, complete genome | blastn | 48160 | 342 | 1 | Bacteria | Bacillati | Bacillota | Tissierellia | Tissierellales | Peptoniphilaceae | Peptoniphilus | Peptoniphilus lacrimalis | ||
| 4844602 | 4844602 | PRJNA1074408_S_NODE_5464_length_198_cov_1.741935_g5334_i0 | PRJNA1074408 | 5464 | 198 | 1.741935 | 3.4490313 | Bacillati | 1783272 | Bacteria | Bacteria | 366 | 5.4e-97 | NTclustered | gi|1176884116|gb|CP020463.1| | 1282 | g5334 | i0 | 100 | 505.722222222222 | 198 | 0 | 100 | 0 | 1 | 198 | 748930 | 748733 | Staphylococcus epidermidis strain 1457 chromosome, complete genome | blastn | 100133 | 366 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus epidermidis | ||
| 6119702 | 6119702 | PRJNA1074408_S_NODE_7125_length_175_cov_2.015152_g6995_i0 | PRJNA1074408 | 7125 | 175 | 2.015152 | 3.526516 | root | 1 | Root_unresolved | Root_unresolved | 324 | 2.83e-84 | NTclustered | gi|1796972337|gb|CP033085.1| | 1280 | g6995 | i0 | 100 | 94.8685714285714 | 175 | 0 | 100 | 0 | 1 | 175 | 2753578 | 2753752 | Staphylococcus aureus strain WH3018 chromosome | blastn | 16602 | 324 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus aureus | ||
| 7394268 | 7394268 | PRJNA1074408_S_NODE_8286_length_163_cov_3.600000_g8156_i0 | PRJNA1074408 | 8286 | 163 | 3.6 | 5.868 | Staphylococcus | 1279 | Bacteria | Bacteria | 296 | 5.68e-76 | NTclustered | gi|2482395019|gb|CP094927.1| | 1280 | g8156 | i0 | 99.387 | 547.938650306749 | 163 | 1 | 100 | 0 | 1 | 163 | 969638 | 969476 | Staphylococcus aureus strain 13 chromosome, complete genome | blastn | 89314 | 296 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus aureus | ||
| 8669731 | 8669731 | PRJNA1074408_S_NODE_3507_length_246_cov_1.980296_g3377_i0 | PRJNA1074408 | 3507 | 246 | 1.980296 | 4.87152816 | Bacillus | 1386 | Bacteria | Bacteria | 455 | 1.4500000000000002e-123 | NTclustered | gi|1783154386|gb|CP040336.1| | 2026191 | g3377 | i0 | 100 | 1125.0081300813 | 246 | 0 | 100 | 0 | 1 | 246 | 4388532 | 4388287 | Bacillus luti strain FJ chromosome, complete genome | blastn | 276752 | 455 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Bacillaceae | Bacillus | Bacillus luti | ||
| 9118622 | 9118622 | PRJNA1074408_S_NODE_5488_length_198_cov_1.141935_g5358_i0 | PRJNA1074408 | 5488 | 198 | 1.141935 | 2.2610313 | Bacillus sp. 3G2 | 3375707 | Bacteria | Bacteria | 361 | 2.51e-95 | NTclustered | gi|2844132743|gb|CP172246.1| | 3375707 | g5358 | i0 | 99.495 | 101.484848484848 | 198 | 1 | 100 | 0 | 1 | 198 | 3849585 | 3849782 | Bacillus sp. 3G2 chromosome, complete genome | blastn | 20094 | 361 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Bacillaceae | Bacillus | Bacillus sp. 3G2 | ||
| 9944700 | 9944700 | PRJNA1074408_S_NODE_8388_length_162_cov_3.403361_g8258_i0 | PRJNA1074408 | 8388 | 162 | 3.403361 | 5.51344482 | root | 1 | Root_unresolved | Root_unresolved | 300 | 4.36e-77 | NTclustered | gi|1796972337|gb|CP033085.1| | 1280 | g8258 | i0 | 100 | 97.0555555555556 | 162 | 0 | 100 | 0 | 1 | 162 | 2682524 | 2682363 | Staphylococcus aureus strain WH3018 chromosome | blastn | 15723 | 300 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus aureus | ||
| 9944702 | 9944702 | PRJNA1074408_S_NODE_8668_length_160_cov_1.478632_g8538_i0 | PRJNA1074408 | 8668 | 160 | 1.478632 | 2.3658112 | Clostridia | 186801 | Bacteria | Bacteria | 296 | 5.55e-76 | NTclustered | gi|662031610|emb|LK932435.1| | 1496 | g8538 | i0 | 100 | 242.25625 | 160 | 0 | 100 | 0 | 1 | 160 | 2140 | 1981 | Peptoclostridium difficile genome assembly 7032994, scaffold BN1097_Contig_93 | blastn | 38761 | 296 | 1 | Bacteria | Bacillati | Bacillota | Clostridia | Peptostreptococcales | Peptostreptococcaceae | Clostridioides | Clostridioides difficile | ||
| 10394290 | 10394290 | PRJNA1074408_S_NODE_9009_length_157_cov_1.263158_g8879_i0 | PRJNA1074408 | 9009 | 157 | 1.263158 | 1.98315806 | Paraclostridium sordellii | 1505 | Bacteria | Bacteria | 63.9 | 5.98e-6 | NTclustered | gi|731157630|emb|LN681234.1| | 1505 | g8879 | i0 | 100 | 10.2738853503185 | 34 | 0 | 22 | 0 | 23 | 56 | 1531733 | 1531700 | [Clostridium] sordellii genome assembly JGS6382, chromosome : 1 | blastn | 1613 | 63.9 | 1 | Bacteria | Bacillati | Bacillota | Clostridia | Peptostreptococcales | Peptostreptococcaceae | Paraclostridium | Paraclostridium sordellii | ||
| 11219997 | 11219997 | PRJNA1074408_S_NODE_8909_length_158_cov_0.852174_g8779_i0 | PRJNA1074408 | 8909 | 158 | 0.852174 | 1.34643492 | Streptococcus | 1301 | Bacteria | Bacteria | 248 | 1.55e-61 | NTclustered | gi|2179901676|gb|CP046524.1| | 1303 | g8779 | i0 | 94.937 | 303.759493670886 | 158 | 8 | 100 | 0 | 1 | 158 | 18420 | 18263 | Streptococcus oralis strain SOT chromosome, complete genome | blastn | 47994 | 248 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Streptococcus oralis | ||
| 12495327 | 12495327 | PRJNA1074408_S_NODE_2470_length_291_cov_2.983871_g2340_i0 | PRJNA1074408 | 2470 | 291 | 2.983871 | 8.68306461 | Staphylococcus | 1279 | Bacteria | Bacteria | 532 | 7.9e-147 | NTclustered | gi|2556673542|gb|OR367734.1| | 1282 | g2340 | i0 | 99.656 | 108.996563573883 | 291 | 1 | 100 | 0 | 1 | 291 | 334 | 44 | Staphylococcus epidermidis strain A3 16S ribosomal RNA gene, partial sequence | blastn | 31718 | 532 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus epidermidis | ||
| 12944730 | 12944730 | PRJNA1074408_S_NODE_6411_length_184_cov_1.021277_g6281_i0 | PRJNA1074408 | 6411 | 184 | 1.021277 | 1.87914968 | Bacillus sp. 3G2 | 3375707 | Bacteria | Bacteria | 340 | 2.99e-89 | NTclustered | gi|2844132743|gb|CP172246.1| | 3375707 | g6281 | i0 | 100 | 98.9021739130435 | 184 | 0 | 100 | 0 | 1 | 184 | 4922141 | 4922324 | Bacillus sp. 3G2 chromosome, complete genome | blastn | 18198 | 340 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Bacillaceae | Bacillus | Bacillus sp. 3G2 | ||
| 13769850 | 13769850 | PRJNA1074408_S_NODE_6911_length_178_cov_1.066667_g6781_i0 | PRJNA1074408 | 6911 | 178 | 1.066667 | 1.89866726 | Candidatus Neoarthromitus | 49082 | Bacteria | Bacteria | 324 | 2.89e-84 | NTclustered | gi|342329141|dbj|AP012202.1| | 1029718 | g6781 | i0 | 99.438 | 3 | 178 | 1 | 100 | 0 | 1 | 178 | 1224869 | 1224692 | Candidatus Arthromitus sp. SFB-mouse-Japan DNA, complete genome | blastn | 534 | 324 | 1 | Bacteria | Bacillati | Bacillota | Clostridia | Eubacteriales | Clostridiaceae | Candidatus Neoarthromitus | Candidatus Arthromitus sp. SFB-mouse | ||
| 15044179 | 15044179 | PRJNA1074408_S_NODE_6172_length_187_cov_1.437500_g6042_i0 | PRJNA1074408 | 6172 | 187 | 1.4375 | 2.688125 | Paenibacillus | 44249 | Bacteria | Bacteria | 346 | 6.56e-91 | NTclustered | gi|2230200769|gb|CP073714.1| | 1472 | g6042 | i0 | 100 | 1173.6256684492 | 187 | 0 | 100 | 0 | 1 | 187 | 89631 | 89445 | Paenibacillus pabuli strain E1 chromosome, complete genome | blastn | 219468 | 346 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Paenibacillaceae | Paenibacillus | Paenibacillus pabuli | ||
| 15044189 | 15044189 | PRJNA1074408_S_NODE_8472_length_162_cov_1.092437_g8342_i0 | PRJNA1074408 | 8472 | 162 | 1.092437 | 1.76974794 | Staphylococcus | 1279 | Bacteria | Bacteria | 294 | 2.03e-75 | NTclustered | gi|1176884116|gb|CP020463.1| | 1282 | g8342 | i0 | 99.383 | 100 | 162 | 1 | 100 | 0 | 1 | 162 | 1139031 | 1138870 | Staphylococcus epidermidis strain 1457 chromosome, complete genome | blastn | 16200 | 294 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus epidermidis | ||
| 16319038 | 16319038 | PRJNA1074408_S_NODE_2773_length_276_cov_1.394850_g2643_i0 | PRJNA1074408 | 2773 | 276 | 1.39485 | 3.849786 | Aerococcus | 1375 | Bacteria | Bacteria | 466 | 7.65e-127 | NTclustered | gi|984726517|gb|CP014164.1| | 1377 | g2643 | i0 | 97.445 | 551.108695652174 | 274 | 5 | 99 | 2 | 4 | 276 | 18843 | 18571 | Aerococcus viridans strain CCUG4311, complete genome | blastn | 152106 | 466 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Aerococcaceae | Aerococcus | Aerococcus viridans | ||
| 16767940 | 16767940 | PRJNA1074408_S_NODE_5934_length_190_cov_11.707483_g5804_i0 | PRJNA1074408 | 5934 | 190 | 11.707483 | 22.2442177 | Caloranaerobacter azorensis | 116090 | Bacteria | Bacteria | 54.7 | 0.005 | NTclustered | gi|1810187734|gb|CP048617.1| | 116090 | g5804 | i0 | 100 | 0.152631578947368 | 29 | 0 | 15 | 0 | 92 | 120 | 1707613 | 1707585 | Caloranaerobacter azorensis strain T3-1 chromosome, complete genome | blastn | 29 | 54.7 | 1 | Bacteria | Bacillati | Bacillota | Tissierellia | Tissierellales | Thermohalobacteraceae | Caloranaerobacter | Caloranaerobacter azorensis | ||
| 16767955 | 16767955 | PRJNA1074408_S_NODE_8214_length_164_cov_1.586777_g8084_i0 | PRJNA1074408 | 8214 | 164 | 1.586777 | 2.60231428 | Bacillus sp. 3G2 | 3375707 | Bacteria | Bacteria | 303 | 3.42e-78 | NTclustered | gi|2844132743|gb|CP172246.1| | 3375707 | g8084 | i0 | 100 | 100.560975609756 | 164 | 0 | 100 | 0 | 1 | 164 | 1982515 | 1982678 | Bacillus sp. 3G2 chromosome, complete genome | blastn | 16492 | 303 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Bacillaceae | Bacillus | Bacillus sp. 3G2 | ||
| 18042715 | 18042715 | PRJNA1074408_S_NODE_2415_length_295_cov_1.178571_g2285_i0 | PRJNA1074408 | 2415 | 295 | 1.178571 | 3.47678445 | Lactococcus petauri | 1940789 | Bacteria | Bacteria | 54.7 | 0.008 | NTclustered | gi|2257541798|gb|CP086595.1| | 1940789 | g2285 | i0 | 100 | 0.0983050847457627 | 29 | 0 | 10 | 0 | 130 | 158 | 794780 | 794808 | Lactococcus petauri strain LG26 chromosome, complete genome | blastn | 29 | 54.7 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Lactococcus | Lactococcus petauri | ||
| 20142913 | 20142913 | PRJNA1074408_S_NODE_3476_length_247_cov_3.730392_g3346_i0 | PRJNA1074408 | 3476 | 247 | 3.730392 | 9.21406824 | Finegoldia | 150022 | Bacteria | Bacteria | 457 | 4.05e-124 | NTclustered | gi|2127562652|gb|CP085955.1| | 1260 | g3346 | i0 | 100 | 371.016194331984 | 247 | 0 | 100 | 0 | 1 | 247 | 873664 | 873418 | Finegoldia magna strain FDAARGOS_1557 chromosome, complete genome | blastn | 91641 | 457 | 1 | Bacteria | Bacillati | Bacillota | Tissierellia | Tissierellales | Peptoniphilaceae | Finegoldia | Finegoldia magna | ||
| 21418581 | 21418581 | PRJNA1074408_S_NODE_4357_length_222_cov_1.608939_g4227_i0 | PRJNA1074408 | 4357 | 222 | 1.608939 | 3.57184458 | Staphylococcus | 1279 | Bacteria | Bacteria | 411 | 2.8199999999999996e-110 | NTclustered | gi|1176884116|gb|CP020463.1| | 1282 | g4227 | i0 | 100 | 100 | 222 | 0 | 100 | 0 | 1 | 222 | 1138883 | 1138662 | Staphylococcus epidermidis strain 1457 chromosome, complete genome | blastn | 22200 | 411 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus epidermidis | ||
| 24416915 | 24416915 | PRJNA1074408_S_NODE_4320_length_223_cov_1.822222_g4190_i0 | PRJNA1074408 | 4320 | 223 | 1.822222 | 4.06355506 | Lachnospiraceae bacterium oral taxon 096 | 712982 | Bacteria | Bacteria | 412 | 7.88e-111 | NTclustered | gi|2030188580|gb|CP073340.1| | 712982 | g4190 | i0 | 100 | 443.735426008969 | 223 | 0 | 100 | 0 | 1 | 223 | 162156 | 162378 | Lachnospiraceae bacterium oral taxon 096 strain F0428 chromosome | blastn | 98953 | 412 | 1 | Bacteria | Bacillati | Bacillota | Clostridia | Lachnospirales | Lachnospiraceae | Lachnospiraceae bacterium oral taxon 096 |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;