RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1074408" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA1074408 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12944726 12944726 PRJNA1074408_S_NODE_5491_length_198_cov_0.929032_g5361_i0 PRJNA1074408 5491 198 0.929032 1.83948336 uncultured Amoebozoa 590481 Root_unresolved Root_unresolved 361 2.51e-95   NTclustered gi|221185864|gb|FJ577811.1| 590481 g5361 i0 99.497 24.4141414141414 199 0 100 1 1 198 907 709 Uncultured Amoebozoa clone Ivry07 18S ribosomal RNA gene, partial sequence blastn 4834 361 1 Eukaryota Amoebozoa             uncultured Amoebozoa
21867803 21867803 PRJNA1074408_S_NODE_8198_length_164_cov_1.983471_g8068_i0 PRJNA1074408 8198 164 1.983471 3.25289244 Physarum polycephalum 5791 Evosea other_Eukaryota 111 2.23e-20   NTclustered gi|15284027|dbj|AB070525.1| 5791 g8068 i0 80.132 16.1219512195122 151 28 91 2 1 150 211 360 Physarum polycephalum ub1 mRNA for ubiquitin 1, complete cds blastn 2644 111 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;