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contig_metadata

23 rows where analysis = "blastn", bioproject = "PRJNA1074407" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 23 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1074407 · 23 ✖

analysis 1

  • blastn · 23 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
188727 188727 PRJNA1074407_P_NODE_137401_length_247_cov_1.310345_g133563_i0 PRJNA1074407 137401 247 1.310345 3.23655215 Trichinella spiralis 6334 Nematoda Nematoda 159 1.28e-34   NTclustered gi|339244724|ref|XM_003378240.1| 6334 g133563 i0 84.81 0.639676113360324 158 24 64 0 90 247 1077 920 Trichinella spiralis kinesin heavy chain (Tsp_06224) mRNA, complete cds blastn 158 159 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
2741015 2741015 PRJNA1074407_P_NODE_70203_length_489_cov_3.000000_g66371_i0 PRJNA1074407 70203 489 3 14.67 Trichinella spiralis 6334 Nematoda Nematoda 228 7.379999999999997e-55   NTclustered gi|339252409|ref|XM_003371380.1| 6334 g66371 i0 76.574 0.811860940695297 397 83 79 5 102 489 1 396 Trichinella spiralis troponin C, isoform 2 (Tsp_11636) mRNA, complete cds blastn 397 228 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
2741574 2741574 PRJNA1074407_P_NODE_95603_length_364_cov_1.288660_g91766_i0 PRJNA1074407 95603 364 1.28866 4.6907224 Trichinella spiralis 6334 Nematoda Nematoda 311 5.16e-80   NTclustered gi|339246888|ref|XM_003375030.1| 6334 g91766 i0 87.004 0.760989010989011 277 35 76 1 8 283 621 897 Trichinella spiralis putative LIM domain protein (Tsp_04264) mRNA, complete cds blastn 277 311 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
5292155 5292155 PRJNA1074407_P_NODE_30225_length_1044_cov_4.023687_g27161_i0 PRJNA1074407 30225 1044 4.023687 42.00729228 Capillaria sp. ALS-2019 2651741 Nematoda Nematoda 263 4.500000000000001e-65   NTclustered gi|1811126246|gb|MN526255.1| 2651741 g27161 i0 99.31 19.477969348659 145 1 84 0 1 145 1188 1044 Capillaria sp. ALS-2019 large subunit ribosomal RNA gene, partial sequence blastn 20335 263 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Capillaria Capillaria sp. ALS-2019
5293774 5293774 PRJNA1074407_P_NODE_97925_length_355_cov_11.031915_g94087_i0 PRJNA1074407 97925 355 11.031915 39.16329825 Aonchotheca paranalis 2025203 Nematoda Nematoda 483 1.0099999999999998e-131   NTclustered gi|1279640587|gb|MF621021.1| 2025203 g94087 i0 91.243 31.7915492957746 354 31 99 0 2 355 3555 3908 Aonchotheca paranalis isolate PL 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 11286 483 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Aonchotheca Aonchotheca paranalis
6566952 6566952 PRJNA1074407_P_NODE_16806_length_1512_cov_16.585823_g14748_i0 PRJNA1074407 16806 1512 16.585823 250.77764376 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 2737 0   NTclustered gi|2095998828|gb|MZ708958.1| 1904821 g14748 i0 99.339 53.8492063492063 1512 10 100 0 1 1512 5647 7158 Pseudocapillaria tomentosa mitochondrion, complete genome blastn 81420 2737 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa
6567749 6567749 PRJNA1074407_P_NODE_46966_length_722_cov_11.779661_g43279_i0 PRJNA1074407 46966 722 11.779661 85.04915242 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 1323 0   NTclustered gi|2095998828|gb|MZ708958.1| 1904821 g43279 i0 99.723 62.8254847645429 722 2 100 0 1 722 3245 2524 Pseudocapillaria tomentosa mitochondrion, complete genome blastn 45360 1323 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa
7841197 7841197 PRJNA1074407_P_NODE_127787_length_267_cov_1.077320_g123949_i0 PRJNA1074407 127787 267 1.07732 2.8764444 Caenorhabditis elegans 6239 Nematoda Nematoda 56.5 0.002   NTclustered gi|687865940|emb|LK928062.1| 6239 g123949 i0 100 0.224719101123595 30 0 11 0 230 259 5809 5838 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_contig0000088 blastn 60 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
9118385 9118385 PRJNA1074407_P_NODE_89268_length_390_cov_1.381703_g85431_i0 PRJNA1074407 89268 390 1.381703 5.3886417 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 710 0   NTclustered gi|2095998828|gb|MZ708958.1| 1904821 g85431 i0 99.487 7.95641025641026 390 2 100 0 1 390 1178 1567 Pseudocapillaria tomentosa mitochondrion, complete genome blastn 3103 710 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa
10392392 10392392 PRJNA1074407_P_NODE_22249_length_1284_cov_2.150289_g19700_i0 PRJNA1074407 22249 1284 2.150289 27.60971076 Trichinella spiralis 6334 Nematoda Nematoda 715 0   NTclustered gi|339254855|ref|XM_003372603.1| 6334 g19700 i0 82.045 16.7710280373832 841 149 65 2 137 976 1 840 Trichinella spiralis tropomyosin (Tsp_11392) mRNA, complete cds blastn 21534 715 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
11668580 11668580 PRJNA1074407_P_NODE_51290_length_664_cov_2.147208_g47524_i0 PRJNA1074407 51290 664 2.147208 14.25746112 Ancylostoma caninum 29170 Nematoda Nematoda 342 3.5e-89   NTclustered gi|86160923|gb|DQ358106.1| 29170 g47524 i0 76.471 0.97289156626506 646 142 97 10 3 643 1234 1874 Ancylostoma caninum paramyosin mRNA, complete cds blastn 646 342 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma Ancylostoma caninum
15490902 15490902 PRJNA1074407_P_NODE_111633_length_310_cov_2.725738_g107795_i0 PRJNA1074407 111633 310 2.725738 8.4497878 Trichinella spiralis 6334 Nematoda Nematoda 150 9.98e-32   NTclustered gi|339243730|ref|XM_003377743.1| 6334 g107795 i0 84.868 0.490322580645161 152 20 48 3 14 162 312 161 Trichinella spiralis ADP/ATP translocase 1 (Tsp_01983) mRNA, complete cds blastn 152 150 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
16767169 16767169 PRJNA1074407_P_NODE_63674_length_538_cov_1.369892_g59850_i0 PRJNA1074407 63674 538 1.369892 7.37001896 Trichinella spiralis 6334 Nematoda Nematoda 407 9.79e-109   NTclustered gi|339240906|ref|XM_003376331.1| 6334 g59850 i0 83.484 79.5799256505576 442 67 82 6 100 538 2270 1832 Trichinella spiralis zinc finger protein (Tsp_00587) mRNA, complete cds blastn 42814 407 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
16767537 16767537 PRJNA1074407_P_NODE_80414_length_431_cov_1.536313_g76578_i0 PRJNA1074407 80414 431 1.536313 6.62150903 Trichinella spiralis 6334 Nematoda Nematoda 374 7.809999999999997e-99   NTclustered gi|339254111|ref|XM_003372231.1| 6334 g76578 i0 82.588 97.9860788863109 425 72 98 2 5 428 599 176 Trichinella spiralis moesin/ezrin/radixin protein (Tsp_10541) mRNA, complete cds blastn 42232 374 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
18039742 18039742 PRJNA1074407_P_NODE_102835_length_338_cov_1.728302_g98997_i0 PRJNA1074407 102835 338 1.728302 5.84166076 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 608 1.509999999999999e-169   NTclustered gi|2095998828|gb|MZ708958.1| 1904821 g98997 i0 99.112 1.48520710059172 338 3 100 0 1 338 8373 8710 Pseudocapillaria tomentosa mitochondrion, complete genome blastn 502 608 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa
18041727 18041727 PRJNA1074407_P_NODE_57195_length_597_cov_13.454198_g53392_i0 PRJNA1074407 57195 597 13.454198 80.32156206 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 1070 0   NTclustered gi|2095998828|gb|MZ708958.1| 1904821 g53392 i0 98.995 2.56951423785595 597 6 100 0 1 597 7220 7816 Pseudocapillaria tomentosa mitochondrion, complete genome blastn 1534 1070 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa
18042171 18042171 PRJNA1074407_P_NODE_74295_length_464_cov_1.680307_g70460_i0 PRJNA1074407 74295 464 1.680307 7.79662448 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 852 0   NTclustered gi|2095998828|gb|MZ708958.1| 1904821 g70460 i0 99.784 7.14870689655172 464 1 100 0 1 464 12234 12697 Pseudocapillaria tomentosa mitochondrion, complete genome blastn 3317 852 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa
19315893 19315893 PRJNA1074407_P_NODE_62796_length_545_cov_1.578390_g58972_i0 PRJNA1074407 62796 545 1.57839 8.6022255 Trichinella spiralis 6334 Nematoda Nematoda 134 1.86e-26   NTclustered gi|339254111|ref|XM_003372231.1| 6334 g58972 i0 83.333 0.264220183486239 144 24 26 0 3 146 1594 1737 Trichinella spiralis moesin/ezrin/radixin protein (Tsp_10541) mRNA, complete cds blastn 144 134 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
19316304 19316304 PRJNA1074407_P_NODE_81556_length_425_cov_6.099432_g77720_i0 PRJNA1074407 81556 425 6.099432 25.922586 Trichinella spiralis 6334 Nematoda Nematoda 130 1.84e-25   NTclustered gi|1938390596|gb|MW302146.1| 6334 g77720 i0 89.32 22.3623529411765 103 11 24 0 323 425 6239 6341 Trichinella spiralis isolate Europe-Poland-22D20-B small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 9504 130 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
20589312 20589312 PRJNA1074407_P_NODE_114997_length_301_cov_1.052632_g111159_i0 PRJNA1074407 114997 301 1.052632 3.16842232 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 534 2.28e-147   NTclustered gi|2095998828|gb|MZ708958.1| 1904821 g111159 i0 98.671 1.42524916943522 301 4 100 0 1 301 11142 11442 Pseudocapillaria tomentosa mitochondrion, complete genome blastn 429 534 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa
21864846 21864846 PRJNA1074407_P_NODE_102058_length_341_cov_1.470149_g98220_i0 PRJNA1074407 102058 341 1.470149 5.01320809 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 630 3.2499999999999986e-176   NTclustered gi|1070586637|gb|KU987805.1| 1904821 g98220 i0 100 95.1671554252199 341 0 100 0 1 341 946 606 Pseudocapillaria tomentosa 18S ribosomal RNA gene, partial sequence blastn 32452 630 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa
21867375 21867375 PRJNA1074407_P_NODE_79098_length_437_cov_3.656593_g75262_i0 PRJNA1074407 79098 437 3.656593 15.97931141 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 710 0   NTclustered gi|2095998828|gb|MZ708958.1| 1904821 g75262 i0 96.092 15.3363844393593 435 17 99 0 1 435 4323 4757 Pseudocapillaria tomentosa mitochondrion, complete genome blastn 6702 710 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa
24415802 24415802 PRJNA1074407_P_NODE_50940_length_668_cov_4.905882_g47177_i0 PRJNA1074407 50940 668 4.905882 32.77129176 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 1190 0   NTclustered gi|2095998828|gb|MZ708958.1| 1904821 g47177 i0 98.802 5.35329341317365 668 8 100 0 1 668 4210 4877 Pseudocapillaria tomentosa mitochondrion, complete genome blastn 3576 1190 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;