RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJNA1074407" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 1 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1074407 · 1 ✖

analysis 1

  • blastn · 1 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18040927 18040927 PRJNA1074407_P_NODE_26375_length_1148_cov_1.741395_g23529_i0 PRJNA1074407 26375 1148 1.741395 19.9912146 Arcobacteraceae bacterium 2808971 Bacteria Bacteria 56.5 0.009   NTclustered gi|2621713474|emb|OY771505.1| 2808971 g23529 i0 94.444 0.0574912891986063 36 2 3 0 276 311 892100 892135 MAG: Arcobacteraceae bacterium isolate 2add6294-6f5d-422d-8d5e-cb49cf879a66 genome assembly, chromosome: 1 blastn 66 56.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae   Arcobacteraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;