RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1074407" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA1074407 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10392097 10392097 PRJNA1074407_P_NODE_142049_length_243_cov_1.776471_g138211_i0 PRJNA1074407 142049 243 1.776471 4.31682453 Deinococcus sp. NW-56 2080419 Bacteria Bacteria 416 6.739999999999998e-112   NTclustered gi|1339790003|gb|CP026516.1| 2080419 g138211 i0 97.925 206.962962962963 241 4 99 1 1 241 544868 544629 Deinococcus sp. NW-56 chromosome, complete genome blastn 50292 416 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. NW-56
11219726 11219726 PRJNA1074407_P_NODE_101289_length_344_cov_1.022140_g97451_i0 PRJNA1074407 101289 344 1.02214 3.5161616 Deinococcus 1298 Bacteria Bacteria 580 3.3599999999999993e-161   NTclustered gi|470486828|ref|NR_076782.1| 502394 g97451 i0 97.101 211.220930232558 345 8 100 2 1 344 869 526 Deinococcus gobiensis strain I-0 23S ribosomal RNA gene, complete sequence blastn 72660 580 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus gobiensis
16765731 16765731 PRJNA1074407_P_NODE_138174_length_247_cov_0.873563_g134336_i0 PRJNA1074407 138174 247 0.873563 2.15770061 Deinococcus sp. NW-56 2080419 Bacteria Bacteria 435 1.9e-117   NTclustered gi|1339790003|gb|CP026516.1| 2080419 g134336 i0 98.381 34.9959514170041 247 4 100 0 1 247 429732 429978 Deinococcus sp. NW-56 chromosome, complete genome blastn 8644 435 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. NW-56

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;