RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1074407" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA1074407 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9116258 9116258 PRJNA1074407_P_NODE_132228_length_256_cov_1.136612_g128390_i0 PRJNA1074407 132228 256 1.136612 2.90972672 Phycisphaerales bacterium 2052180 Bacteria Bacteria 56.5 0.002   NTclustered gi|2108078657|gb|CP070747.1| 2052180 g128390 i0 94.595 0.3046875 37 1 14 1 201 236 683114 683150 MAG: Phycisphaerales bacterium isolate bin358 chromosome blastn 78 56.5 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales     Phycisphaerales bacterium
11219942 11219942 PRJNA1074407_P_NODE_80989_length_428_cov_1.707042_g77153_i0 PRJNA1074407 80989 428 1.707042 7.30613976 Bacteria 2 Bacteria Bacteria 544 5.589999999999998e-150   NTclustered gi|2874254043|emb|OY970367.1| 120965 g77153 i0 90.215 152.953271028037 419 37 97 4 12 428 3454581 3454165 MAG: uncultured Planctomycetota bacterium isolate MFD04580.bin.c.2 genome assembly, chromosome: 1 blastn 65464 544 1 Bacteria PVC group Pseudomonadati Planctomycetota         uncultured Planctomycetota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;