RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1073712" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1073712 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4013974 4013974 PRJNA1073712_P_NODE_11544_length_250_cov_2.033898_g11461_i0 PRJNA1073712 11544 250 2.033898 5.084745 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 462 8.83e-126   NTclustered gi|325195820|emb|FR826611.1| 890382 g11461 i0 100 21.136 250 0 100 0 1 250 278 29 Albugo laibachii Nc14, genomic contig CONTIG_3778_NC14_v4_313_8 blastn 5284 462 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
6565526 6565526 PRJNA1073712_P_NODE_12726_length_248_cov_0.880000_g12643_i0 PRJNA1073712 12726 248 0.88 2.1824 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 215 2.7e-51   NTclustered gi|675199240|ref|XM_008910257.1| 761204 g12643 i0 82.661 89.8145161290323 248 37 100 3 1 248 785 1026 Phytophthora parasitica INRA-310 ATP synthase subunit beta, mitochondrial mRNA blastn 22274 215 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
18039332 18039332 PRJNA1073712_P_NODE_9355_length_268_cov_1.553846_g9272_i0 PRJNA1073712 9355 268 1.553846 4.16430728 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 228 3.8e-55   NTclustered gi|673016107|ref|XM_008863793.1| 157072 g9272 i0 82.593 8.63805970149254 270 35 96 6 1 258 340 71 Aphanomyces invadans hypothetical protein partial mRNA blastn 2315 228 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;