RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1073712" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1073712 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9115231 9115231 PRJNA1073712_P_NODE_1648_length_487_cov_1.468599_g1565_i0 PRJNA1073712 1648 487 1.468599 7.15207713 Yoldiella inconspicua 1069093 Mollusca Mollusca 333 1.51e-86   NTclustered gi|343952731|gb|JF410984.1| 1069093 g1565 i0 84.058 72.870636550308 345 55 71 0 9 353 394 50 Yoldiella inconspicua beta tubulin (BTUB) gene, partial cds blastn 35488 333 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Nuculanida sp. Yoldiidae Yoldiella Yoldiella inconspicua
23139970 23139970 PRJNA1073712_P_NODE_8319_length_279_cov_1.252427_g8236_i0 PRJNA1073712 8319 279 1.252427 3.49427133 Bradybaena similaris 145626 Mollusca Mollusca 54.7 0.007   NTclustered gi|2912986657|dbj|AP039591.1| 145626 g8236 i0 94.286 0.125448028673835 35 2 13 0 228 262 13048294 13048260 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 10, sequence blastn 35 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;