RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1073712" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA1073712 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11666259 11666259 PRJNA1073712_P_NODE_16370_length_242_cov_0.911243_g16287_i0 PRJNA1073712 16370 242 0.911243 2.20520806 Chlamydomonas reinhardtii 3055 Plants Plants 172 1.6e-38   NTclustered gi|2082251523|ref|XM_001692437.2| 3055 g16287 i0 87.333 19.3099173553719 150 19 62 0 1 150 525 674 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_07g351650v5), mRNA blastn 4673 172 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
12494993 12494993 PRJNA1073712_P_NODE_16770_length_241_cov_0.916667_g16687_i0 PRJNA1073712 16770 241 0.916667 2.20916747 root 1 Root_unresolved Root_unresolved 239 1.55e-58   NTclustered gi|1279575454|gb|MF683078.1| 44745 g16687 i0 84.774 140.788381742739 243 32 100 4 1 241 3473 3712 Haematococcus lacustris 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence; chloroplast blastn 33930 239 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
24413555 24413555 PRJNA1073712_P_NODE_580_length_743_cov_6.658209_g506_i0 PRJNA1073712 580 743 6.658209 49.47049287 Polulichloris maxima 2704661 Plants Plants 106 5.63e-18   NTclustered gi|2473928686|ref|NC_072905.1| 2704661 g506 i0 81.481 0.327052489905787 135 20 18 5 399 531 127394 127525 Polulichloris maxima clone L123 chloroplast, complete genome blastn 243 106 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Polulichloris Polulichloris maxima

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;