RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1073712" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA1073712 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5290351 5290351 PRJNA1073712_P_NODE_11865_length_250_cov_0.870056_g11782_i0 PRJNA1073712 11865 250 0.870056 2.17514 TM7 phylum sp. oral taxon 349 713051 Bacteria Bacteria 462 8.83e-126   NTclustered gi|2028829559|gb|CP072328.1| 713051 g11782 i0 100 1.992 250 0 100 0 1 250 460199 460448 TM7 phylum sp. oral taxon 349 strain PM007 chromosome, complete genome blastn 498 462 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         TM7 phylum sp. oral taxon 349
14216307 14216307 PRJNA1073712_P_NODE_5372_length_324_cov_1.641434_g5289_i0 PRJNA1073712 5372 324 1.641434 5.31824616 Candidatus Mycosynbacter amalyticus 2665156 Bacteria Bacteria 499 9.039999999999999e-137   NTclustered gi|1799615131|gb|CP045921.1| 2665156 g5289 i0 94.462 358.348765432099 325 17 100 1 1 324 221195 220871 Candidatus Mycosynbacter amalyticus isolate JR1 chromosome, complete genome blastn 116105 499 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota       Candidatus Mycosynbacter Candidatus Mycosynbacter amalyticus
14216336 14216336 PRJNA1073712_P_NODE_8492_length_277_cov_1.333333_g8409_i0 PRJNA1073712 8492 277 1.333333 3.69333241 Candidatus Saccharibacteria bacterium oral taxon 955 2572087 Bacteria Bacteria 383 7.96e-102   NTclustered gi|1805658607|gb|CP047918.1| 2572087 g8409 i0 91.667 9.34657039711191 276 23 99 0 1 276 599548 599823 Candidatus Saccharibacteria bacterium oral taxon 955 strain FS14P chromosome, complete genome blastn 2589 383 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium oral taxon 955

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;