RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1073712" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA1073712 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2291547 2291547 PRJNA1073712_P_NODE_2762_length_404_cov_2.087613_g2679_i0 PRJNA1073712 2762 404 2.087613 8.43395652 Dictyostelium 5782 Evosea other_Eukaryota 237 9.97e-58   NTclustered gi|263753|gb|S52651.1| 44689 g2679 i0 78.1 3.96782178217822 379 79 93 4 25 401 2573 2197 RNA polymerase II largest subunit [Dictyostelium discoideum, mRNA Partial, 2874 nt] blastn 1603 237 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
23968631 23968631 PRJNA1073712_P_NODE_6699_length_300_cov_1.180617_g6616_i0 PRJNA1073712 6699 300 1.180617 3.541851 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 209 1.56e-49   NTclustered gi|399764264|gb|JQ271775.1| 1215986 g6616 i0 80.919 5.78 283 38 91 11 27 300 294 19 Tubulinea group 02 sp. 1HFKJ 18S ribosomal RNA gene, partial sequence blastn 1734 209 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 02 sp. 1HFKJ

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;