RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1073183" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1073183 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10390564 10390564 PRJNA1073183_P_NODE_27449_length_250_cov_0.870056_g27354_i0 PRJNA1073183 27449 250 0.870056 2.17514 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 67.6 8.09e-7   NTclustered gi|687162766|emb|LN036785.1| 99802 g27354 i0 79.381 0.512 97 19 39 1 150 246 5181 5276 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_scaffold0035968 blastn 128 67.6 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
12940941 12940941 PRJNA1073183_P_NODE_2231_length_823_cov_1.493333_g2154_i0 PRJNA1073183 2231 823 1.493333 12.29013059 Schistosoma mansoni 6183 Platyhelminthes Platyhelminthes 667 0   NTclustered gi|1369885|gb|L78441.1|SCM14332R 6183 g2154 i0 86.993 71.0085054678007 592 77 72 0 2 593 10 601 Schistosoma mansoni 14-3-3-2 mRNA, 3' end of cds blastn 58440 667 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma mansoni
20588375 20588375 PRJNA1073183_P_NODE_2977_length_724_cov_1.818740_g2893_i0 PRJNA1073183 2977 724 1.81874 13.1676776 Schistosoma mansoni 6183 Platyhelminthes Platyhelminthes 625 3.3999999999999998e-174   NTclustered gi|1369885|gb|L78441.1|SCM14332R 6183 g2893 i0 85.197 6.45027624309392 608 90 84 0 112 719 1 608 Schistosoma mansoni 14-3-3-2 mRNA, 3' end of cds blastn 4670 625 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma mansoni
23139834 23139834 PRJNA1073183_P_NODE_8419_length_439_cov_6.795082_g8325_i0 PRJNA1073183 8419 439 6.795082 29.83040998 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 721 0   NTclustered gi|68479954|gb|DQ076149.1| 6182 g8325 i0 96.355 1 439 15 100 1 1 439 449 12 Schistosoma japonicum clone 1XA1 unknown mRNA blastn 439 721 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;