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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA1073183" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1073183 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
187049 187049 PRJNA1073183_P_NODE_12401_length_367_cov_1.326531_g12306_i0 PRJNA1073183 12401 367 1.326531 4.86836877 Oigolaimella attenuata 669116 Nematoda Nematoda 300 1.13e-76   NTclustered gi|256709322|gb|GQ422336.1| 669116 g12306 i0 83.54 50.2643051771117 322 51 87 2 46 366 42 362 Oigolaimella attenuata large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 18447 300 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Oigolaimella Oigolaimella attenuata
4844168 4844168 PRJNA1073183_P_NODE_33864_length_242_cov_0.911243_g33769_i0 PRJNA1073183 33864 242 0.911243 2.20520806 Opisthokonta 33154 Nematoda Nematoda 161 3.47e-35   NTclustered gi|687022714|emb|LM525628.1| 174720 g33769 i0 79.574 42.6115702479339 235 40 95 6 1 231 117457 117687 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000037 blastn 10312 161 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
16764200 16764200 PRJNA1073183_P_NODE_27994_length_249_cov_0.875000_g27899_i0 PRJNA1073183 27994 249 0.875 2.17875 Diplogastrellus gracilis 669117 Nematoda Nematoda 187 5.919999999999998e-43   NTclustered gi|256709130|gb|GQ422217.1| 669117 g27899 i0 80.816 89.574297188755 245 41 97 5 7 248 723 482 Diplogastrellus gracilis large subunit ribosomal protein 2 (rpl-2) mRNA, partial cds blastn 22304 187 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Diplogastrellus Diplogastrellus gracilis
20142430 20142430 PRJNA1073183_P_NODE_13776_length_350_cov_0.833935_g13681_i0 PRJNA1073183 13776 350 0.833935 2.9187725 Caenorhabditis 6237 Nematoda Nematoda 115 4.16e-21   NTclustered gi|268558427|ref|XM_002637158.1| 6238 g13681 i0 83.333 1.63714285714286 126 19 36 2 226 350 200 76 Caenorhabditis briggsae Protein CBR-EMO-1 (Cbr-emo-1), partial mRNA blastn 573 115 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
21864250 21864250 PRJNA1073183_P_NODE_34798_length_232_cov_2.509434_g34703_i0 PRJNA1073183 34798 232 2.509434 5.82188688 Strongyloides papillosus 174720 Nematoda Nematoda 99 2.63e-16   NTclustered gi|687022720|emb|LM525634.1| 174720 g34703 i0 87.5 4.81034482758621 88 7 37 4 142 227 44189 44104 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000042 blastn 1116 99 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
23139367 23139367 PRJNA1073183_P_NODE_14039_length_346_cov_1.769231_g13944_i0 PRJNA1073183 14039 346 1.769231 6.12153926 Strongyloides ratti 34506 Nematoda Nematoda 278 4.96e-70   NTclustered gi|1376156759|ref|XM_024645793.1| 34506 g13944 i0 81.159 52.121387283237 345 65 99 0 1 345 354 10 Strongyloides ratti Ras-like protein 3 (SRAE_X000250800), partial mRNA blastn 18034 278 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
24412900 24412900 PRJNA1073183_P_NODE_10160_length_403_cov_1.181818_g10066_i0 PRJNA1073183 10160 403 1.181818 4.76272654 Loa loa 7209 Nematoda Nematoda 65.8 4.96e-6   NTclustered gi|1158595002|ref|XM_020446451.1| 7209 g10066 i0 93.182 0.109181141439206 44 3 11 0 134 177 1600 1643 Loa loa procollagen partial mRNA blastn 44 65.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Loa Loa loa
24413434 24413434 PRJNA1073183_P_NODE_9340_length_419_cov_1.621387_g9246_i0 PRJNA1073183 9340 419 1.621387 6.79361153 Diplogasteriana schneideri 669146 Nematoda Nematoda 52.8 0.04   NTclustered gi|256709142|gb|GQ422223.1| 669146 g9246 i0 83.051 0.140811455847255 59 9 14 1 317 375 166 109 Diplogasteriana schneideri large subunit ribosomal protein 29 (rpl-29) mRNA, complete cds blastn 59 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Diplogasteriana Diplogasteriana schneideri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;