RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1073183" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1073183 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2291408 2291408 PRJNA1073183_P_NODE_16442_length_322_cov_1.899598_g16347_i0 PRJNA1073183 16442 322 1.899598 6.11670556 Mamiellales 13792 Plants Plants 233 1.01e-56   NTclustered gi|1275573527|ref|XM_022983366.1| 70448 g16347 i0 82.117 25.5869565217391 274 47 85 2 9 281 810 1082 Ostreococcus tauri S-adenosyl-L-homocysteine hydrolase, conserved site (OT_ostta09g02610), partial mRNA blastn 8239 235 0.991489361702128 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Bathycoccaceae Ostreococcus Ostreococcus tauri
2737732 2737732 PRJNA1073183_P_NODE_20843_length_286_cov_2.169014_g20748_i0 PRJNA1073183 20843 286 2.169014 6.20338004 Ostreococcus tauri 70448 Plants Plants 150 9.11e-32   NTclustered gi|1275573527|ref|XM_022983366.1| 70448 g20748 i0 79.018 16.3811188811189 224 43 78 4 33 254 886 1107 Ostreococcus tauri S-adenosyl-L-homocysteine hydrolase, conserved site (OT_ostta09g02610), partial mRNA blastn 4685 150 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Bathycoccaceae Ostreococcus Ostreococcus tauri
4013607 4013607 PRJNA1073183_P_NODE_20924_length_286_cov_1.258216_g20829_i0 PRJNA1073183 20924 286 1.258216 3.59849776 Monoraphidium neglectum 145388 Plants Plants 228 4.0899999999999984e-55   NTclustered gi|926781757|ref|XM_014043899.1| 145388 g20829 i0 84.649 24.9335664335664 228 35 80 0 2 229 172 399 Monoraphidium neglectum 60S ribosomal protein mRNA blastn 7131 228 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
11666059 11666059 PRJNA1073183_P_NODE_33430_length_242_cov_0.911243_g33335_i0 PRJNA1073183 33430 242 0.911243 2.20520806 Polytomella sp. Pringsheim 198.80 37502 Plants Plants 124 4.55e-24   NTclustered gi|402244316|emb|FR686759.1| 37502 g33335 i0 80.625 0.661157024793388 160 31 66 0 2 161 1000 1159 Polytomella sp. Pringsheim 198.80 mRNA for 40S ribosomal protein L3 (rpl3 gene) blastn 160 124 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Polytomella Polytomella sp. Pringsheim 198.80
15043698 15043698 PRJNA1073183_P_NODE_13452_length_354_cov_0.832740_g13357_i0 PRJNA1073183 13452 354 0.83274 2.9478996 Eukaryota 2759 Plants Plants 488 2.1499999999999997e-133   NTclustered gi|969822364|gb|KT950949.1| 3130 g13357 i0 91.954 98.9915254237288 348 28 98 0 7 354 376 29 Bryopsis plumosa actin mRNA, partial cds blastn 35043 492 0.991869918699187 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Bryopsidaceae Bryopsis Bryopsis plumosa
20588357 20588357 PRJNA1073183_P_NODE_28677_length_248_cov_1.320000_g28582_i0 PRJNA1073183 28677 248 1.32 3.2736 Micromonas commoda 296587 Plants Plants 152 2.15e-32   NTclustered gi|255077919|ref|XM_002502494.1| 296587 g28582 i0 82.486 43.1572580645161 177 27 71 4 7 181 695 869 Micromonas commoda H+-translocating pyrophosphatase family partial mRNA blastn 10703 152 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Micromonas Micromonas commoda

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;