RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1073183" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1073183 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16764123 16764123 PRJNA1073183_P_NODE_22794_length_274_cov_1.487562_g22699_i0 PRJNA1073183 22794 274 1.487562 4.07591988 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 484 2.0899999999999994e-132   NTclustered gi|76574293|gb|DQ139441.1| 171953 g22699 i0 98.54 137.638686131387 274 4 100 0 1 274 1782 1509 Uncultured Acidobacteria bacterium clone CAL1 23S ribosomal RNA gene, partial sequence blastn 37713 484 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
17593813 17593813 PRJNA1073183_P_NODE_13834_length_349_cov_1.115942_g13739_i0 PRJNA1073183 13834 349 1.115942 3.89463758 Pseudomonadati 3379134 Bacteria Bacteria 135 3.18e-27   NTclustered gi|2874253710|emb|OY969475.1| 2283092 g13739 i0 75.427 24.5730659025788 293 64 82 8 62 348 4925134 4925424 MAG: Pyrinomonadaceae bacterium isolate MFD01916.bin.c.1 genome assembly, chromosome: 1 blastn 8576 135 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;