RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1073183" and tax_clade = "Cyanobacteriota/Melainabacteria group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • Cyanobacteriota/Melainabacteria group · 3 ✖

bioproject 1

  • PRJNA1073183 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3566667 3566667 PRJNA1073183_P_NODE_23663_length_268_cov_1.579487_g23568_i0 PRJNA1073183 23663 268 1.579487 4.23302516 Chroococcidiopsis 54298 Bacteria Bacteria 496 9.429999999999999e-136   NTclustered gi|485099142|ref|NR_102537.1| 251229 g23568 i0 100 157.10447761194 268 0 100 0 1 268 539 806 Chroococcidiopsis thermalis PCC 7203 strain PCC 7203 23S ribosomal RNA, complete sequence blastn 42104 496 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Chroococcidiopsidales Chroococcidiopsidaceae Chroococcidiopsis Chroococcidiopsis thermalis
12941130 12941130 PRJNA1073183_P_NODE_31451_length_245_cov_0.895349_g31356_i0 PRJNA1073183 31451 245 0.895349 2.19360505 Nostoc sp. UHCC 0926 3025190 Bacteria Bacteria 276 1.21e-69   NTclustered gi|2444439127|gb|CP117768.1| 3025190 g31356 i0 87.045 3.00816326530612 247 28 100 4 1 245 715995 715751 Nostoc sp. UHCC 0926 chromosome, complete genome blastn 737 276 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Nostoc Nostoc sp. UHCC 0926
21863912 21863912 PRJNA1073183_P_NODE_14758_length_338_cov_2.098113_g14663_i0 PRJNA1073183 14758 338 2.098113 7.09162194 Candidatus Gastranaerophilales bacterium 2137880 Bacteria Bacteria 520 7.279999999999998e-143   NTclustered gi|2729058672|emb|OZ006972.1| 2137880 g14663 i0 94.379 116.301775147929 338 19 100 0 1 338 511632 511969 MAG: Candidatus Gastranaerophilales bacterium isolate metabat2_pooled_hifiasm.1023 MAG genome assembly, chromosome: 1 blastn 39310 520 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Candidatus Melainabacteria   Candidatus Gastranaerophilales     Candidatus Gastranaerophilales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;