RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1073183" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 6 ✖

bioproject 1

  • PRJNA1073183 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
187012 187012 PRJNA1073183_P_NODE_10301_length_400_cov_1.094801_g10207_i0 PRJNA1073183 10301 400 1.094801 4.379204 Cavenderia fasciculata 261658 Evosea other_Eukaryota 383 1.2e-101   NTclustered gi|470266101|ref|XM_004361626.1| 261658 g10207 i0 84.08 99.48 402 58 99 3 2 400 992 594 Cavenderia fasciculata uncharacterized protein (DFA_05968), partial mRNA blastn 39792 383 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
1016035 1016035 PRJNA1073183_P_NODE_26721_length_251_cov_0.865169_g26626_i0 PRJNA1073183 26721 251 0.865169 2.17157419 Dictyostelium 5782 Evosea other_Eukaryota 204 5.93e-48   NTclustered gi|1408305|gb|U61989.1|DDU61989 44689 g26626 i0 81.275 5.35458167330677 251 47 100 0 1 251 748 498 Dictyostelium discoideum ndufv1 (ndufv1) mRNA, complete cds blastn 1344 204 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
2737938 2737938 PRJNA1073183_P_NODE_31643_length_244_cov_1.777778_g31548_i0 PRJNA1073183 31643 244 1.777778 4.33777832 Acytostelium subglobosum 361139 Evosea other_Eukaryota 235 2.0399999999999997e-57   NTclustered gi|831771146|ref|XM_012897758.1| 1410327 g31548 i0 85.463 71.422131147541 227 31 93 2 17 242 469 694 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 17427 235 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
11666056 11666056 PRJNA1073183_P_NODE_33350_length_242_cov_0.911243_g33255_i0 PRJNA1073183 33350 242 0.911243 2.20520806 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 268 1.99e-67   NTclustered gi|62910949|gb|AY925001.1| 5778 g33255 i0 96.875 0.834710743801653 160 5 66 0 1 160 160 1 Hartmannella vermiformis Rpl7A mRNA, partial cds blastn 202 268 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
12941208 12941208 PRJNA1073183_P_NODE_3651_length_657_cov_2.306507_g3562_i0 PRJNA1073183 3651 657 2.306507 15.15375099 Cavenderia fasciculata 261658 Evosea other_Eukaryota 654 0   NTclustered gi|470237241|ref|XM_004350527.1| 261658 g3562 i0 84.733 99.3348554033486 655 98 99 2 1 654 1113 460 Cavenderia fasciculata actin (DFA_11631), partial mRNA blastn 65263 654 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
16764059 16764059 PRJNA1073183_P_NODE_18674_length_303_cov_0.852174_g18579_i0 PRJNA1073183 18674 303 0.852174 2.58208722 Cavenderia fasciculata 261658 Evosea other_Eukaryota 56.5 0.002   NTclustered gi|470237325|ref|XM_004350569.1| 261658 g18579 i0 96.97 0.108910891089109 33 1 11 0 165 197 612 644 Cavenderia fasciculata uncharacterized protein (DFA_11673), partial mRNA blastn 33 56.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;