RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1073005" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1073005 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1461551 1461551 PRJNA1073005_P_NODE_6662_length_339_cov_1.432331_g6543_i0 PRJNA1073005 6662 339 1.432331 4.85560209 Habrotrocha constricta 104786 Rotifera other_Eukaryota 261 4.89e-65   NTclustered gi|402761805|gb|JX184034.1| 104786 g6543 i0 80.98 9.11504424778761 347 50 100 14 1 339 388 50 Habrotrocha constricta NADH dehydrogenase subunit 1 (ND1) gene, partial cds; mitochondrial blastn 3090 261 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Habrotrochidae Habrotrocha Habrotrocha constricta
5289757 5289757 PRJNA1073005_P_NODE_4125_length_493_cov_1.097619_g4006_i0 PRJNA1073005 4125 493 1.097619 5.41126167 Habrotrocha constricta 104786 Rotifera other_Eukaryota 555 3.009999999999999e-153   NTclustered gi|402761757|gb|JX184010.1| 104786 g4006 i0 87.169 12.0385395537525 491 59 99 4 2 490 21 509 Habrotrocha constricta cytochrome c oxidase subunit 2 (COX2) gene, complete cds; mitochondrial blastn 5935 555 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Habrotrochidae Habrotrocha Habrotrocha constricta
9114605 9114605 PRJNA1073005_P_NODE_9548_length_247_cov_0.885057_g9429_i0 PRJNA1073005 9548 247 0.885057 2.18609079 Habrotrocha constricta 104786 Rotifera other_Eukaryota 309 1.2e-79   NTclustered gi|402761789|gb|JX184026.1| 104786 g9429 i0 90.254 37.5789473684211 236 23 96 0 1 236 622 857 Habrotrocha constricta cytochrome b (CYTB) gene, complete cds; mitochondrial blastn 9282 309 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Habrotrochidae Habrotrocha Habrotrocha constricta
10390265 10390265 PRJNA1073005_P_NODE_2349_length_721_cov_3.449074_g2237_i0 PRJNA1073005 2349 721 3.449074 24.86782354 Philodina citrina 468664 Rotifera other_Eukaryota 1009 0   NTclustered gi|407227484|emb|FR856884.1| 468664 g2237 i0 92.083 16.7988904299584 720 51 99 6 2 719 2392 1677 Philodina citrina complete mitochondrial genome blastn 12112 1009 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina citrina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;