RNAquarium Metadata Server
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contig_metadata

14 rows where analysis = "blastn", bioproject = "PRJNA1073005" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 14 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1073005 · 14 ✖

analysis 1

  • blastn · 14 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
186981 186981 PRJNA1073005_P_NODE_2021_length_782_cov_3.145275_g1919_i0 PRJNA1073005 2021 782 3.145275 24.5960505 Concholepas concholepas 137544 Mollusca Mollusca 1013 0   NTclustered gi|443298642|gb|KC107792.1| 137544 g1919 i0 91.622 57.8618925831202 740 50 94 5 1 734 38 771 Concholepas concholepas ferritin mRNA, complete cds blastn 45248 1013 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Neogastropoda Muricidae Concholepas Concholepas concholepas
186985 186985 PRJNA1073005_P_NODE_4701_length_447_cov_1.852941_g4582_i0 PRJNA1073005 4701 447 1.852941 8.28264627 Rapana venosa 55521 Mollusca Mollusca 798 0   NTclustered gi|197935839|ref|NC_011193.1| 55521 g4582 i0 98.881 46.0178970917226 447 5 100 0 1 447 13281 12835 Rapana venosa mitochondrion, complete genome blastn 20570 798 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Neogastropoda Muricidae Rapana Rapana venosa
186994 186994 PRJNA1073005_P_NODE_7541_length_300_cov_2.713656_g7422_i0 PRJNA1073005 7541 300 2.713656 8.140968 Rapana venosa 55521 Mollusca Mollusca 549 8.119999999999997e-152   NTclustered gi|2319117147|gb|MZ435265.1| 55521 g7422 i0 99.667 62.9966666666667 300 1 100 0 1 300 8554 8255 Rapana venosa voucher NTM P.55685 mitochondrion, complete genome blastn 18899 549 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Neogastropoda Muricidae Rapana Rapana venosa
2737552 2737552 PRJNA1073005_P_NODE_9303_length_249_cov_0.875000_g9184_i0 PRJNA1073005 9303 249 0.875 2.17875 Rapana venosa 55521 Mollusca Mollusca 460 3.16e-125   NTclustered gi|2319117147|gb|MZ435265.1| 55521 g9184 i0 100 16.8755020080321 249 0 100 0 1 249 2967 2719 Rapana venosa voucher NTM P.55685 mitochondrion, complete genome blastn 4202 460 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Neogastropoda Muricidae Rapana Rapana venosa
5289761 5289761 PRJNA1073005_P_NODE_4985_length_428_cov_1.301408_g4866_i0 PRJNA1073005 4985 428 1.301408 5.57002624 Aplysia californica 6500 Mollusca Mollusca 320 1.0199999999999998e-82   NTclustered gi|1897945200|ref|XM_005112946.3| 6500 g4866 i0 80.278 99.7943925233645 431 79 100 5 1 428 494 921 PREDICTED: Aplysia californica elongation factor 1-alpha (LOC101850460), transcript variant X1, mRNA blastn 42712 320 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Aplysiida Aplysiidae Aplysia Aplysia californica
14215654 14215654 PRJNA1073005_P_NODE_4232_length_484_cov_2.136253_g4113_i0 PRJNA1073005 4232 484 2.136253 10.33946452 Rapana venosa 55521 Mollusca Mollusca 889 0   NTclustered gi|2319117147|gb|MZ435265.1| 55521 g4113 i0 99.793 68.9070247933884 484 1 100 0 1 484 856 373 Rapana venosa voucher NTM P.55685 mitochondrion, complete genome blastn 33351 889 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Neogastropoda Muricidae Rapana Rapana venosa
16763890 16763890 PRJNA1073005_P_NODE_10494_length_226_cov_2.503268_g10375_i0 PRJNA1073005 10494 226 2.503268 5.65738568 Rapana venosa 55521 Mollusca Mollusca 418 1.7199999999999998e-112   NTclustered gi|2319117147|gb|MZ435265.1| 55521 g10375 i0 100 64.9778761061947 226 0 100 0 1 226 12605 12830 Rapana venosa voucher NTM P.55685 mitochondrion, complete genome blastn 14685 418 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Neogastropoda Muricidae Rapana Rapana venosa
16763900 16763900 PRJNA1073005_P_NODE_7814_length_289_cov_1.125000_g7695_i0 PRJNA1073005 7814 289 1.125 3.25125 Sinotaia quadrata 200191 Mollusca Mollusca 231 3.1999999999999994e-56   NTclustered gi|2687757672|gb|PP391284.1| 200191 g7695 i0 81.625 0.97923875432526 283 49 97 3 9 289 334 53 Sinotaia quadrata tropomyosin mRNA, complete cds, alternatively spliced blastn 283 231 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Architaenioglossa Viviparidae Sinotaia Sinotaia quadrata
18038682 18038682 PRJNA1073005_P_NODE_6435_length_350_cov_1.245487_g6316_i0 PRJNA1073005 6435 350 1.245487 4.3592045 Littorina saxatilis 31220 Mollusca Mollusca 339 2.27e-88   NTclustered gi|2868695927|ref|XM_070338880.1| 31220 g6316 i0 85.938 64.4828571428571 320 41 91 3 33 350 104 421 PREDICTED: Littorina saxatilis small ribosomal subunit protein uS10-like (LOC138966596), mRNA blastn 22569 339 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Littorinimorpha Littorinidae Littorina Littorina saxatilis
19312654 19312654 PRJNA1073005_P_NODE_4236_length_484_cov_1.206813_g4117_i0 PRJNA1073005 4236 484 1.206813 5.84097492 Rapana venosa 55521 Mollusca Mollusca 883 0   NTclustered gi|197935839|ref|NC_011193.1| 55521 g4117 i0 99.587 80.4090909090909 484 2 100 0 1 484 5643 5160 Rapana venosa mitochondrion, complete genome blastn 38918 883 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Neogastropoda Muricidae Rapana Rapana venosa
20588043 20588043 PRJNA1073005_P_NODE_7657_length_295_cov_2.324324_g7538_i0 PRJNA1073005 7657 295 2.324324 6.8567558 Rapana venosa 55521 Mollusca Mollusca 536 6.199999999999999e-148   NTclustered gi|2319117147|gb|MZ435265.1| 55521 g7538 i0 99.659 94.5762711864407 293 1 99 0 1 293 1889 2181 Rapana venosa voucher NTM P.55685 mitochondrion, complete genome blastn 27900 536 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Neogastropoda Muricidae Rapana Rapana venosa
21863830 21863830 PRJNA1073005_P_NODE_4118_length_493_cov_2.016667_g3999_i0 PRJNA1073005 4118 493 2.016667 9.94216831 Rapana venosa 55521 Mollusca Mollusca 905 0   NTclustered gi|2319117147|gb|MZ435265.1| 55521 g3999 i0 99.797 98.3184584178499 493 1 100 0 1 493 1458 966 Rapana venosa voucher NTM P.55685 mitochondrion, complete genome blastn 48471 905 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Neogastropoda Muricidae Rapana Rapana venosa
24412877 24412877 PRJNA1073005_P_NODE_5020_length_426_cov_1.308782_g4901_i0 PRJNA1073005 5020 426 1.308782 5.57541132 Rapana venosa 55521 Mollusca Mollusca 787 0   NTclustered gi|2319117147|gb|MZ435265.1| 55521 g4901 i0 100 100.159624413146 426 0 100 0 1 426 6053 5628 Rapana venosa voucher NTM P.55685 mitochondrion, complete genome blastn 42668 787 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Neogastropoda Muricidae Rapana Rapana venosa
24412890 24412890 PRJNA1073005_P_NODE_8280_length_273_cov_1.260000_g8161_i0 PRJNA1073005 8280 273 1.26 3.4398 Rapana venosa 55521 Mollusca Mollusca 65.8 3.22e-6   NTclustered gi|642944481|gb|KJ667084.1| 55521 g8161 i0 90.196 0.186813186813187 51 4 19 1 45 95 462 511 Rapana venosa clone Amf31 microsatellite sequence blastn 51 65.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Neogastropoda Muricidae Rapana Rapana venosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;