RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1073005" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA1073005 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7839595 7839595 PRJNA1073005_P_NODE_4327_length_477_cov_1.193069_g4208_i0 PRJNA1073005 4327 477 1.193069 5.69093913 Vexillifera expectata 1789827 Discosea other_Eukaryota 634 3.619999999999999e-177   NTclustered gi|1042160925|dbj|LC102269.1| 1789827 g4208 i0 90.737 99.6918238993711 475 44 99 0 1 475 526 52 Vexillifera expectata gene for actin, partial cds, strain: 4730_cl4 blastn 47553 634 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera expectata
7839601 7839601 PRJNA1073005_P_NODE_6347_length_354_cov_1.284698_g6228_i0 PRJNA1073005 6347 354 1.284698 4.54783092 Vannella sp. 1973054 Discosea other_Eukaryota 645 1.2099999999999996e-180   NTclustered gi|2169663314|gb|OL989990.1| 1973054 g6228 i0 99.435 97.7316384180791 354 2 100 0 1 354 1388 1741 Vannella sp. isolate P147 small subunit ribosomal RNA gene, partial sequence blastn 34597 645 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp.
12940717 12940717 PRJNA1073005_P_NODE_2851_length_640_cov_9.380952_g2735_i0 PRJNA1073005 2851 640 9.380952 60.0380928 Cochliopodium minus 313997 Discosea other_Eukaryota 809 0   NTclustered gi|330902862|gb|JF298257.1| 313997 g2735 i0 90.358 52.70625 643 25 97 21 1 621 631 4 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 33732 809 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
16763886 16763886 PRJNA1073005_P_NODE_10194_length_242_cov_0.911243_g10075_i0 PRJNA1073005 10194 242 0.911243 2.20520806 Thecamoeba similis 242545 Discosea other_Eukaryota 298 2.54e-76   NTclustered gi|33946350|gb|AY294154.1| 242545 g10075 i0 89.121 91.8512396694215 239 26 99 0 4 242 41 279 Thecamoeba similis actin mRNA, complete cds blastn 22228 298 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Thecamoeba Thecamoeba similis
18038674 18038674 PRJNA1073005_P_NODE_1935_length_802_cov_3.039781_g1836_i0 PRJNA1073005 1935 802 3.039781 24.37904362 Cochliopodium minus 313997 Discosea other_Eukaryota 900 0   NTclustered gi|330902862|gb|JF298257.1| 313997 g1836 i0 87.728 53.5324189526185 823 33 100 35 1 802 2216 1441 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 42933 900 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
19312649 19312649 PRJNA1073005_P_NODE_2576_length_682_cov_4.111658_g2462_i0 PRJNA1073005 2576 682 4.111658 28.04150756 Cochliopodium minus 313997 Discosea other_Eukaryota 745 0   NTclustered gi|330902862|gb|JF298257.1| 313997 g2462 i0 86.364 57.4604105571848 726 43 100 33 1 682 644 1357 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 39188 745 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
19312668 19312668 PRJNA1073005_P_NODE_8716_length_258_cov_1.335135_g8597_i0 PRJNA1073005 8716 258 1.335135 3.4446483 Platyamoeba placida 3454475 Discosea other_Eukaryota 316 7.539999999999998e-82   NTclustered gi|33946348|gb|AY294153.1| 197527 g8597 i0 88.76 98.1976744186046 258 29 100 0 1 258 565 308 Platyamoeba placida actin mRNA, partial cds blastn 25335 316 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba placida

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;