RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

19 rows where analysis = "blastn", bioproject = "PRJNA1073005" and tax_clade = "Sar"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_clade 1

  • Sar · 19 ✖

bioproject 1

  • PRJNA1073005 · 19 ✖

analysis 1

  • blastn · 19 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
186991 186991 PRJNA1073005_P_NODE_7021_length_322_cov_1.855422_g6902_i0 PRJNA1073005 7021 322 1.855422 5.97445884 Strongylidium orientale 1286065 SAR_Eukaryotes SAR_Eukaryotes 424 5.56e-114   NTclustered gi|759083295|gb|KM221972.1| 1286065 g6902 i0 90.402 94.3447204968944 323 29 100 2 1 322 352 31 Strongylidium orientale voucher CXM2009120301 alpha-tubulin gene, partial cds blastn 30379 424 1 Eukaryota Sar   Ciliophora Spirotrichea Stichotrichida Spirofilidae Strongylidium Strongylidium orientale
2737545 2737545 PRJNA1073005_P_NODE_8703_length_259_cov_1.102151_g8584_i0 PRJNA1073005 8703 259 1.102151 2.85457109 Thraustotheca clavata 74557 SAR_Eukaryotes SAR_Eukaryotes 204 6.149999999999998e-48   NTclustered gi|59894163|gb|AY729864.1| 74557 g8584 i0 81.008 82.023166023166 258 47 99 2 3 259 1226 970 Thraustotheca clavata heat shock protein 90 gene, partial cds blastn 21244 204 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Thraustotheca Thraustotheca clavata
4013416 4013416 PRJNA1073005_P_NODE_3804_length_524_cov_1.447894_g3685_i0 PRJNA1073005 3804 524 1.447894 7.58696456 Poterioochromonas malhamensis 88167 SAR_Eukaryotes SAR_Eukaryotes 952 0   NTclustered gi|323690576|gb|GU935635.1| 88167 g3685 i0 99.616 78.9885496183206 521 2 99 0 1 521 521 1 Poteriochroomonas malhamensis strain SAG 933.1c 28S ribosomal RNA gene, partial sequence blastn 41390 952 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae Poterioochromonas Poterioochromonas malhamensis
4013427 4013427 PRJNA1073005_P_NODE_8544_length_264_cov_1.502618_g8425_i0 PRJNA1073005 8544 264 1.502618 3.96691152 Poterioochromonas malhamensis 88167 SAR_Eukaryotes SAR_Eukaryotes 488 1.5499999999999999e-133   NTclustered gi|2088238071|ref|NC_056910.1| 88167 g8425 i0 100 1 264 0 100 0 1 264 34024 33761 Poterioochromonas malhamensis strain SZCZR2049 plastid, complete genome blastn 264 488 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae Poterioochromonas Poterioochromonas malhamensis
5289755 5289755 PRJNA1073005_P_NODE_2945_length_626_cov_2.549729_g2828_i0 PRJNA1073005 2945 626 2.549729 15.96130354 Pyrocystis lunula 2972 SAR_Eukaryotes SAR_Eukaryotes 776 0   NTclustered gi|27450758|gb|AF508263.1| 2972 g2828 i0 89.103 97.7108626198083 624 68 99 0 1 624 1135 512 Pyrocystis lunula actin mRNA, complete cds blastn 61167 776 1 Eukaryota Sar     Dinophyceae Gonyaulacales Pyrocystaceae Pyrocystis Pyrocystis lunula
6564943 6564943 PRJNA1073005_P_NODE_6186_length_362_cov_1.415225_g6067_i0 PRJNA1073005 6186 362 1.415225 5.1231145 Guttulinopsis rogosa 2231170 SAR_Eukaryotes SAR_Eukaryotes 669 0   NTclustered gi|1402550485|gb|MH488771.1| 2231170 g6067 i0 100 7.04419889502762 362 0 100 0 1 362 479 118 Guttulinopsis rogosa isolate ATCC 50030 small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 2550 669 1 Eukaryota Sar   Cercozoa     Guttulinopsidae Guttulinopsis Guttulinopsis rogosa
6564946 6564946 PRJNA1073005_P_NODE_7086_length_319_cov_1.565041_g6967_i0 PRJNA1073005 7086 319 1.565041 4.99248079 Euplotes vannus 5939 SAR_Eukaryotes SAR_Eukaryotes 296 1.25e-75   NTclustered gi|409187347|gb|JQ289914.1| 5939 g6967 i0 84.211 153.736677115987 304 48 99 0 2 305 515 212 Euplotes vannus clone eu568c1 polyubiquitin gene, partial cds; macronuclear blastn 49042 296 1 Eukaryota Sar   Ciliophora Spirotrichea Euplotida Euplotidae Euplotes Euplotes vannus
7393678 7393678 PRJNA1073005_P_NODE_5086_length_422_cov_1.263610_g4967_i0 PRJNA1073005 5086 422 1.26361 5.3324342 Pseudo-nitzschia 41953 SAR_Eukaryotes SAR_Eukaryotes 89.8 3.1e-13   NTclustered gi|2852238308|gb|PQ498360.1| 189737 g4967 i0 98.039 7.03080568720379 51 1 12 0 321 371 33791 33841 Pseudo-nitzschia galaxiae isolate CNS01103 mitochondrion, complete genome blastn 2967 89.8 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Pseudo-nitzschia Pseudo-nitzschia galaxiae
7393756 7393756 PRJNA1073005_P_NODE_9546_length_247_cov_0.885057_g9427_i0 PRJNA1073005 9546 247 0.885057 2.18609079 Vorticella 60849 SAR_Eukaryotes SAR_Eukaryotes 364 2.519999999999999e-96   NTclustered gi|530758434|gb|KF524393.1| 60850 g9427 i0 92.509 101.914979757085 267 0 100 1 1 247 179 445 Vorticella convallaria isolate Gzpop 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 25173 364 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Vorticella Vorticella convallaria
7839599 7839599 PRJNA1073005_P_NODE_5567_length_392_cov_2.197492_g5448_i0 PRJNA1073005 5567 392 2.197492 8.61416864 Poterioochromonas malhamensis 88167 SAR_Eukaryotes SAR_Eukaryotes 725 0   NTclustered gi|2088238071|ref|NC_056910.1| 88167 g5448 i0 100 105.408163265306 392 0 100 0 1 392 14622 15013 Poterioochromonas malhamensis strain SZCZR2049 plastid, complete genome blastn 41320 725 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae Poterioochromonas Poterioochromonas malhamensis
11665634 11665634 PRJNA1073005_P_NODE_6270_length_357_cov_1.897887_g6151_i0 PRJNA1073005 6270 357 1.897887 6.77545659 Aspidisca lynceus 2035364 SAR_Eukaryotes SAR_Eukaryotes 514 3.59e-141   NTclustered gi|2328859120|gb|OP828525.1| 2035364 g6151 i0 97.659 36.8543417366947 299 7 84 0 59 357 1750 1452 Aspidisca lynceus isolate LCY2015101602 large subunit ribosomal RNA gene, partial sequence blastn 13157 514 1 Eukaryota Sar   Ciliophora Spirotrichea Euplotida Aspidiscidae Aspidisca Aspidisca lynceus
11665637 11665637 PRJNA1073005_P_NODE_7110_length_318_cov_1.240816_g6991_i0 PRJNA1073005 7110 318 1.240816 3.94579488 Entodinium caudatum 47911 SAR_Eukaryotes SAR_Eukaryotes 363 1.2099999999999999e-95   NTclustered gi|92790163|emb|AJ965267.1| 47911 g6991 i0 87.54 175.424528301887 313 39 98 0 6 318 449 137 Entodinium caudatum partial mRNA for Polyubiqutin 1 (polyubiqutin 1 gene) blastn 55785 363 1 Eukaryota Sar   Ciliophora Litostomatea Entodiniomorphida Ophryoscolecidae Entodinium Entodinium caudatum
15489607 15489607 PRJNA1073005_P_NODE_1193_length_1045_cov_1.737654_g1117_i0 PRJNA1073005 1193 1045 1.737654 18.1584843 Guinardia delicatula 1244696 SAR_Eukaryotes SAR_Eukaryotes 294 1.6e-74   NTclustered gi|2074156200|gb|MW413905.1| 216802 g1117 i0 74.827 50.3837320574163 723 147 75 28 1 703 24572 23865 Guinardia delicatula mitochondrion, complete genome blastn 52651 294 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Rhizosoleniales Rhizosoleniaceae Guinardia Guinardia delicatula
16318420 16318420 PRJNA1073005_P_NODE_4473_length_465_cov_1.747449_g4354_i0 PRJNA1073005 4473 465 1.747449 8.12563785 Spumella 89043 SAR_Eukaryotes SAR_Eukaryotes 797 0   NTclustered gi|269993986|dbj|AB520724.1| 183512 g4354 i0 97.639 100.243010752688 466 8 100 3 1 465 536 999 Uncultured chrysophyte gene for 18S ribosomal RNA, partial sequence, clone: 10182008-Euk18S-Clone9 blastn 46613 797 1 Eukaryota Sar     Chrysophyceae       uncultured Chrysophyceae
16318523 16318523 PRJNA1073005_P_NODE_9513_length_247_cov_0.885057_g9394_i0 PRJNA1073005 9513 247 0.885057 2.18609079 Euplotida 33831 SAR_Eukaryotes SAR_Eukaryotes 268 2.04e-67   NTclustered gi|399146186|gb|JQ736722.1| 577312 g9394 i0 86.235 64.3198380566802 247 34 100 0 1 247 296 50 Aspidisca magna isolate B272 alpha-tubulin gene, partial cds; macronuclear blastn 15887 268 1 Eukaryota Sar   Ciliophora Spirotrichea Euplotida Aspidiscidae Aspidisca Aspidisca magna
18038695 18038695 PRJNA1073005_P_NODE_895_length_1203_cov_3.023894_g830_i0 PRJNA1073005 895 1203 3.023894 36.37744482 Stramenopile sp. ex Nuclearia delicatula CCAP1552/1 289359 SAR_Eukaryotes SAR_Eukaryotes 2106 0   NTclustered gi|53829555|gb|AY582830.1| 289359 g830 i0 99.739 98.1936824605154 1149 3 96 0 1 1149 90 1238 Stramenopile sp. ex Nuclearia delicatula CCAP1552/1 ef1a gene, partial cds blastn 118127 2106 1 Eukaryota Sar             Stramenopile sp. ex Nuclearia delicatula CCAP1552/1
20588035 20588035 PRJNA1073005_P_NODE_2637_length_672_cov_15.874791_g2523_i0 PRJNA1073005 2637 672 15.874791 106.67859552 Vorticella sp. 4 JG-2011 1295638 SAR_Eukaryotes SAR_Eukaryotes 1085 0   NTclustered gi|512134943|gb|JX178902.1| 1295638 g2523 i0 95.833 91.8616071428571 672 27 100 1 1 672 1000 1670 Vorticella sp. 4 JG-2011 clone 2 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 61731 1085 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Vorticella Vorticella sp. 4 JG-2011
21863837 21863837 PRJNA1073005_P_NODE_7258_length_312_cov_3.004184_g7139_i0 PRJNA1073005 7258 312 3.004184 9.37305408 Poterioochromonas malhamensis 88167 SAR_Eukaryotes SAR_Eukaryotes 577 3.89e-160   NTclustered gi|2088238071|ref|NC_056910.1| 88167 g7139 i0 100 42.9358974358974 312 0 100 0 1 312 15685 15996 Poterioochromonas malhamensis strain SZCZR2049 plastid, complete genome blastn 13396 577 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae Poterioochromonas Poterioochromonas malhamensis
21863839 21863839 PRJNA1073005_P_NODE_7378_length_307_cov_2.286325_g7259_i0 PRJNA1073005 7378 307 2.286325 7.01901775 Extubocellulus spinifer 265572 SAR_Eukaryotes SAR_Eukaryotes 93.5 1.69e-14   NTclustered gi|2632235321|gb|OR922703.1| 265572 g7259 i0 79.021 0.931596091205212 143 24 47 6 165 307 5288 5424 Extubocellulus spinifer strain AGSB0090 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 286 93.5 1 Eukaryota Sar   Bacillariophyta Mediophyceae Cymatosirales Cymatosiraceae Extubocellulus Extubocellulus spinifer

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;