RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1072736" and tax_phylum = "Bacteroidota"

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tax_superkingdom 1

tax_phylum 1

  • Bacteroidota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1072736 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2291161 2291161 PRJNA1072736_S_NODE_4022_length_190_cov_1.775510_g4017_i0 PRJNA1072736 4022 190 1.77551 3.373469 Flavobacterium 237 Bacteria Bacteria 259 8.96e-65   NTclustered gi|470481948|ref|NR_076504.1| 986 g4017 i0 92.778 430.115789473684 180 12 95 1 11 190 1173 995 Flavobacterium johnsoniae strain UW101 23S ribosomal RNA gene, complete sequence blastn 81722 259 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium johnsoniae
9943966 9943966 PRJNA1072736_S_NODE_1248_length_283_cov_3.583333_g1243_i0 PRJNA1072736 1248 283 3.583333 10.14083239 Flavobacteriales 200644 Bacteria Bacteria 518 2.14e-142   NTclustered gi|162280791|gb|EU293154.1| 247 g1243 i0 99.647 106.003533568905 283 1 100 0 1 283 752 470 Empedobacter brevis strain Y7D 16S ribosomal RNA gene, partial sequence blastn 29999 518 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Empedobacter Empedobacter brevis
13769154 13769154 PRJNA1072736_S_NODE_2491_length_225_cov_2.346154_g2486_i0 PRJNA1072736 2491 225 2.346154 5.2788465 Weeksellaceae 2762318 Bacteria Bacteria 416 6.159999999999998e-112   NTclustered gi|2304450266|gb|CP104209.1| 1628248 g2486 i0 100 499.808888888889 225 0 100 0 1 225 1406911 1407135 Empedobacter stercoris strain SCVM0123 chromosome, complete genome blastn 112457 416 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Empedobacter Empedobacter stercoris
13769161 13769161 PRJNA1072736_S_NODE_531_length_374_cov_1.522659_g526_i0 PRJNA1072736 531 374 1.522659 5.69474466 Weeksellaceae 2762318 Bacteria Bacteria 431 3.91e-116   NTclustered gi|1519576354|gb|CP033934.1| 246 g526 i0 90.332 434.72192513369 331 29 88 3 1 329 116579 116908 Chryseobacterium balustinum strain KC_1863 chromosome, complete genome blastn 162586 431 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium balustinum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;