RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1072736" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1072736 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6118966 6118966 PRJNA1072736_S_NODE_545_length_371_cov_1.746951_g540_i0 PRJNA1072736 545 371 1.746951 6.48118821 Corynebacterium 1716 Bacteria Bacteria 669 0   NTclustered gi|2879441308|gb|CP176023.1| 3050208 g540 i0 99.191 371.525606469003 371 3 100 0 1 371 1213904 1213534 Corynebacterium sp. MSK130 chromosome, complete genome blastn 137836 669 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium sp. MSK130
6564929 6564929 PRJNA1072736_S_NODE_3566_length_197_cov_2.857143_g3561_i0 PRJNA1072736 3566 197 2.857143 5.62857171 Cutibacterium granulosum 33011 Bacteria Bacteria 364 1.929999999999999e-96   NTclustered gi|1231673337|emb|LT906441.1| 33011 g3561 i0 100 237.197969543147 197 0 100 0 1 197 1036083 1036279 Cutibacterium granulosum strain NCTC11865 genome assembly, chromosome: 1 blastn 46728 364 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium granulosum
15043474 15043474 PRJNA1072736_S_NODE_3092_length_208_cov_1.987879_g3087_i0 PRJNA1072736 3092 208 1.987879 4.13478832 Corynebacterium 1716 Bacteria Bacteria 368 1.59e-97   NTclustered gi|2550471320|gb|CP100376.1| 38284 g3087 i0 98.558 371 208 3 100 0 1 208 2342952 2342745 Corynebacterium accolens strain CA7 chromosome blastn 77168 368 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium accolens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;