RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1069776" and tax_kingdom = "Shotokuvirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Shotokuvirae · 2 ✖

bioproject 1

  • PRJNA1069776 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1459722 1459722 PRJNA1069776_S_NODE_9802_length_309_cov_5.413534_g9488_i0 PRJNA1069776 9802 309 5.413534 16.72782006 Copiparvovirus ungulate1 3052142 Viruses Viruses 433 8.82e-117   NTclustered gi|2277478549|gb|MZ502228.1| 172296 g9488 i0 92.667 3.7831715210356 300 22 97 0 10 309 4657 4358 Bovine parvovirus - 2 isolate NCS1/USA nonstructural protein and structural protein genes, complete cds blastn 1169 433 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae Copiparvovirus Copiparvovirus ungulate1
20585942 20585942 PRJNA1069776_S_NODE_39257_length_174_cov_4.511450_g38943_i0 PRJNA1069776 39257 174 4.51145 7.849923 Parvovirus macaca3116 3117124 Viruses Viruses 52.8 0.015   NTclustered gi|2710391813|tpg|BK066549.1| 3117124 g38943 i0 100 0.160919540229885 28 0 16 0 147 174 28 1 MAG TPA_asm: Parvovirus macaca3116 isolate Parvo3116 genomic sequence blastn 28 52.8 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Parvovirus macaca3116

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;