RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1068830" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1068830 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5286565 5286565 PRJNA1068830_P_NODE_81825_length_246_cov_1.751445_g81122_i0 PRJNA1068830 81825 246 1.751445 4.3085547 Stenostomum leucops 52061 Platyhelminthes Platyhelminthes 435 1.8900000000000003e-117   NTclustered gi|209968685|gb|FJ384848.1| 52061 g81122 i0 99.174 63.8617886178862 242 1 98 1 1 241 253 12 Stenostomum leucops isolate K04_75 28S ribosomal RNA gene, partial sequence blastn 15710 435 1 Eukaryota Opisthokonta Metazoa Platyhelminthes     Stenostomidae Stenostomum Stenostomum leucops
21416241 21416241 PRJNA1068830_P_NODE_53817_length_297_cov_2.075893_g53114_i0 PRJNA1068830 53817 297 2.075893 6.16540221 Metazoa 33208 Platyhelminthes Platyhelminthes 115 3.47e-21   NTclustered gi|15808977|gb|AF418550.1| 6183 g53114 i0 100 0.626262626262626 62 0 21 0 30 91 1859 1798 Schistosoma mansoni albumin precursor, mRNA, complete cds blastn 186 115 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma mansoni

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;