RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1068830" and tax_phylum = "Planctomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1068830 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4008961 4008961 PRJNA1068830_P_NODE_30224_length_415_cov_2.242690_g29521_i0 PRJNA1068830 30224 415 2.24269 9.3071635 Urbifossiella limnaea 2528023 Bacteria Bacteria 449 1.2099999999999998e-121   NTclustered gi|1712585314|gb|CP036273.1| 2528023 g29521 i0 86.473 99.0674698795181 414 50 99 5 6 415 2018222 2017811 Urbifossiella limnaea strain ETA_A1 chromosome, complete genome blastn 41113 449 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Urbifossiella Urbifossiella limnaea
6117332 6117332 PRJNA1068830_P_NODE_41465_length_345_cov_0.797794_g40762_i0 PRJNA1068830 41465 345 0.797794 2.7523893 Gemmata 113 Bacteria Bacteria 459 1.65e-124   NTclustered gi|12583965|gb|AF245369.1|AF245369 114 g40762 i0 90.778 141.214492753623 347 26 100 5 1 345 1916 1574 Gemmata obscuriglobus 23S ribosomal RNA gene, partial sequence blastn 48719 459 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Gemmata Gemmata obscuriglobus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;