RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1068830" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1068830 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9110776 9110776 PRJNA1068830_P_NODE_60168_length_280_cov_2.212560_g59465_i0 PRJNA1068830 60168 280 2.21256 6.195168 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 374 4.849999999999998e-99   NTclustered gi|575456455|gb|CP007128.1| 861299 g59465 i0 90.845 112.260714285714 284 18 100 6 1 280 3042596 3042317 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 31433 374 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
11661753 11661753 PRJNA1068830_P_NODE_59150_length_283_cov_1.390476_g58447_i0 PRJNA1068830 59150 283 1.390476 3.93504708 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 204 6.809999999999998e-48   NTclustered gi|2874253789|emb|OY969773.1| 412054 g58447 i0 85.096 29.4840989399293 208 21 73 9 37 242 954188 953989 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 8344 204 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
15486266 15486266 PRJNA1068830_P_NODE_74753_length_251_cov_1.775281_g74050_i0 PRJNA1068830 74753 251 1.775281 4.45595531 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 294 3.4200000000000003e-75   NTclustered gi|2874253789|emb|OY969773.1| 412054 g74050 i0 89.54 0.952191235059761 239 15 95 7 1 239 673526 673298 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 239 294 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;