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contig_metadata

31 rows where analysis = "blastn", bioproject = "PRJNA1068830" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 31 ✖

tax_clade 1

bioproject 1

  • PRJNA1068830 · 31 ✖

analysis 1

  • blastn · 31 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1457568 1457568 PRJNA1068830_P_NODE_4962_length_1158_cov_5.668203_g2595_i1 PRJNA1068830 4962 1158 5.668203 65.63779074 Cylindrotheca closterium 2856 SAR_Eukaryotes SAR_Eukaryotes 1114 0   NTclustered gi|184185909|dbj|AB368770.1| 2856 g2595 i1 86.082 35.9991364421416 1049 130 90 14 36 1076 1041 1 Cylindrotheca closterium EFL mRNA for elongation factor-like, partial cds blastn 41687 1114 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Cylindrotheca Cylindrotheca closterium
1458513 1458513 PRJNA1068830_P_NODE_87502_length_243_cov_0.905882_g86799_i0 PRJNA1068830 87502 243 0.905882 2.20129326 Thalassiosira pseudonana 35128 SAR_Eukaryotes SAR_Eukaryotes 272 1.5399999999999998e-68   NTclustered gi|223999030|ref|XM_002289152.1| 296543 g86799 i0 86.831 1 243 32 100 0 1 243 640 882 Thalassiosira pseudonana CCMP1335 predicted protein partial mRNA blastn 243 272 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Thalassiosiraceae Thalassiosira Thalassiosira pseudonana
2289442 2289442 PRJNA1068830_P_NODE_43482_length_335_cov_2.370229_g42779_i0 PRJNA1068830 43482 335 2.370229 7.94026715 Bacillariophyta 2836 SAR_Eukaryotes SAR_Eukaryotes 420 7.52e-113   NTclustered gi|1995710965|gb|MW679567.1| 197759 g42779 i0 89.318 88.7462686567164 337 32 99 4 1 334 4873 4538 Haslea sp. strain NCC456 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 29730 422 0.995260663507109 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Haslea Haslea sp.
2732667 2732667 PRJNA1068830_P_NODE_11443_length_738_cov_13.933835_g10790_i0 PRJNA1068830 11443 738 13.933835 102.8317023 Cylindrotheca fusiformis 2853 SAR_Eukaryotes SAR_Eukaryotes 566 2.13e-156   NTclustered gi|23168431|gb|AY125588.1| 2853 g10790 i0 83.86 9.56910569105691 601 90 81 6 17 615 1 596 Cylindrotheca fusiformis fucoxanthin chlorophyll a/c-binding protein precursor (cffcpB-1) mRNA, complete cds blastn 7062 566 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Cylindrotheca Cylindrotheca fusiformis
2733283 2733283 PRJNA1068830_P_NODE_41563_length_344_cov_1.642066_g40860_i0 PRJNA1068830 41563 344 1.642066 5.64870704 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 490 5.82e-134   NTclustered gi|146762526|gb|EF553458.1| 2850 g40860 i0 92.442 99.8575581395349 344 25 100 1 1 344 4250 3908 Phaeodactylum tricornutum strain CCAP 1055/1 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 34351 490 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
2734033 2734033 PRJNA1068830_P_NODE_70503_length_256_cov_1.989071_g69800_i0 PRJNA1068830 70503 256 1.989071 5.09202176 Thalassiosira pseudonana 35128 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.023   NTclustered gi|224009228|ref|XM_002293537.1| 296543 g69800 i0 100 0.109375 28 0 11 0 133 160 840 813 Thalassiosira pseudonana CCMP1335 predicted protein partial mRNA blastn 28 52.8 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Thalassiosiraceae Thalassiosira Thalassiosira pseudonana
4008862 4008862 PRJNA1068830_P_NODE_24944_length_468_cov_1.544304_g24243_i0 PRJNA1068830 24944 468 1.544304 7.22734272 Gomphonema parvulum 97227 SAR_Eukaryotes SAR_Eukaryotes 837 0   NTclustered gi|2328365172|ref|NC_067848.1| 97227 g24243 i0 98.932 199.00641025641 468 5 100 0 1 468 72949 72482 Gomphonema parvulum voucher personal collection:A.Bruce Cahoon:diatom-2021-A chloroplast, complete genome blastn 93135 837 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Cymbellales Gomphonemataceae Gomphonema Gomphonema parvulum
4009353 4009353 PRJNA1068830_P_NODE_47144_length_320_cov_1.263158_g46441_i0 PRJNA1068830 47144 320 1.263158 4.0421056 Thalassiosira pseudonana 35128 SAR_Eukaryotes SAR_Eukaryotes 368 2.6200000000000003e-97   NTclustered gi|224005153|ref|XM_002296192.1| 296543 g46441 i0 88.141 3.184375 312 33 97 3 3 312 829 520 Thalassiosira pseudonana CCMP1335 predicted protein mRNA blastn 1019 368 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Thalassiosiraceae Thalassiosira Thalassiosira pseudonana
5285160 5285160 PRJNA1068830_P_NODE_23545_length_484_cov_2.751825_g22844_i0 PRJNA1068830 23545 484 2.751825 13.318833 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 407 8.74e-109   NTclustered gi|219117368|ref|XM_002179443.1| 556484 g22844 i0 83.111 0.929752066115702 450 72 93 4 16 463 27 474 Phaeodactylum tricornutum CCAP 1055/1 predicted protein (rps19), mRNA blastn 450 407 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
5285273 5285273 PRJNA1068830_P_NODE_2885_length_1469_cov_6.816619_g2595_i0 PRJNA1068830 2885 1469 6.816619 100.13613311 Cylindrotheca closterium 2856 SAR_Eukaryotes SAR_Eukaryotes 1277 0   NTclustered gi|184185909|dbj|AB368770.1| 2856 g2595 i0 84.806 30.6929884275017 1290 174 87 19 83 1361 1 1279 Cylindrotheca closterium EFL mRNA for elongation factor-like, partial cds blastn 45088 1277 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Cylindrotheca Cylindrotheca closterium
5286080 5286080 PRJNA1068830_P_NODE_63185_length_273_cov_1.560000_g62482_i0 PRJNA1068830 63185 273 1.56 4.2588 Gomphonema affine 431360 SAR_Eukaryotes SAR_Eukaryotes 505 1.6e-138   NTclustered gi|725654841|gb|KJ011591.1| 431360 g62482 i0 100 99.1135531135531 273 0 100 0 1 273 74 346 Gomphonema affine strain FD45 28S ribosomal RNA gene, partial sequence blastn 27058 505 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Cymbellales Gomphonemataceae Gomphonema Gomphonema affine
7836471 7836471 PRJNA1068830_P_NODE_88767_length_242_cov_0.923077_g88064_i0 PRJNA1068830 88767 242 0.923077 2.23384634 Cylindrotheca fusiformis 2853 SAR_Eukaryotes SAR_Eukaryotes 291 4.24e-74   NTclustered gi|23168431|gb|AY125588.1| 2853 g88064 i0 88.655 7.7396694214876 238 27 98 0 4 241 13 250 Cylindrotheca fusiformis fucoxanthin chlorophyll a/c-binding protein precursor (cffcpB-1) mRNA, complete cds blastn 1873 291 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Cylindrotheca Cylindrotheca fusiformis
9109814 9109814 PRJNA1068830_P_NODE_20228_length_531_cov_1.906114_g19527_i0 PRJNA1068830 20228 531 1.906114 10.12146534 Ditylum brightwellii 49249 SAR_Eukaryotes SAR_Eukaryotes 499 1.55e-136   NTclustered gi|398372871|gb|JQ581521.1| 49249 g19527 i0 83.939 88.7080979284369 523 82 98 2 1 522 454 975 Ditylum brightwellii strain B-326 actin mRNA, complete cds blastn 47104 499 1 Eukaryota Sar   Bacillariophyta Mediophyceae Lithodesmiales Lithodesmiaceae Ditylum Ditylum brightwellii
10386451 10386451 PRJNA1068830_P_NODE_59409_length_282_cov_1.866029_g58706_i0 PRJNA1068830 59409 282 1.866029 5.26220178 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 435 2.21e-117   NTclustered gi|146762526|gb|EF553458.1| 2850 g58706 i0 94.386 98.0496453900709 285 13 100 3 1 282 4078 4362 Phaeodactylum tricornutum strain CCAP 1055/1 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 27650 435 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
11661208 11661208 PRJNA1068830_P_NODE_35290_length_379_cov_1.019608_g34587_i0 PRJNA1068830 35290 379 1.019608 3.86431432 Cylindrotheca closterium 2856 SAR_Eukaryotes SAR_Eukaryotes 374 6.789999999999998e-99   NTclustered gi|225685860|dbj|AB461928.1| 2856 g34587 i0 84.615 14.2744063324538 377 56 99 2 2 377 1181 806 Cylindrotheca closterium MATX mRNA for methionine S-adenosyl transferase, partial cds blastn 5410 374 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Cylindrotheca Cylindrotheca closterium
12936286 12936286 PRJNA1068830_P_NODE_31711_length_404_cov_1.338369_g31008_i0 PRJNA1068830 31711 404 1.338369 5.40701076 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 320 9.62e-83   NTclustered gi|219114800|ref|XM_002178160.1| 556484 g31008 i0 81.141 1.1039603960396 403 72 99 4 3 403 979 1379 Phaeodactylum tricornutum CCAP 1055/1 predicted protein partial mRNA blastn 446 320 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
14212201 14212201 PRJNA1068830_P_NODE_72172_length_253_cov_1.300000_g71469_i0 PRJNA1068830 72172 253 1.3 3.289 Thalassiosira pseudonana 35128 SAR_Eukaryotes SAR_Eukaryotes 183 7.8e-42   NTclustered gi|223997787|ref|XM_002288531.1| 296543 g71469 i0 83.938 43.7786561264822 193 29 76 2 62 253 1055 1246 Thalassiosira pseudonana CCMP1335 heat shock protein/chaperone (hsp70_4), mRNA blastn 11076 183 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Thalassiosiraceae Thalassiosira Thalassiosira pseudonana
15485259 15485259 PRJNA1068830_P_NODE_3393_length_1371_cov_1.995378_g3069_i0 PRJNA1068830 3393 1371 1.995378 27.35663238 Ditylum brightwellii 49249 SAR_Eukaryotes SAR_Eukaryotes 883 0   NTclustered gi|398372887|gb|JX305464.1| 49249 g3069 i0 79.066 79.6571845368344 1328 246 96 26 54 1365 2126 815 Ditylum brightwellii strain B-326 heat shock protein 90 (Hsp90) mRNA, complete cds blastn 109210 883 1 Eukaryota Sar   Bacillariophyta Mediophyceae Lithodesmiales Lithodesmiaceae Ditylum Ditylum brightwellii
15486676 15486676 PRJNA1068830_P_NODE_9573_length_820_cov_3.080321_g8942_i0 PRJNA1068830 9573 820 3.080321 25.2586322 Ditylum brightwellii 49249 SAR_Eukaryotes SAR_Eukaryotes 564 8.559999999999997e-156   NTclustered gi|398372885|gb|JX305463.1| 49249 g8942 i0 86.122 52.4682926829268 526 70 64 3 296 820 1679 1156 Ditylum brightwellii strain B-326 heat shock protein 70 (Hsp70) mRNA, complete cds blastn 43024 564 1 Eukaryota Sar   Bacillariophyta Mediophyceae Lithodesmiales Lithodesmiaceae Ditylum Ditylum brightwellii
16759384 16759384 PRJNA1068830_P_NODE_32034_length_401_cov_2.271341_g31331_i0 PRJNA1068830 32034 401 2.271341 9.10807741 Thalassiosira pseudonana 35128 SAR_Eukaryotes SAR_Eukaryotes 327 5.7e-85   NTclustered gi|224001559|ref|XM_002290416.1| 296543 g31331 i0 81.592 1.00249376558603 402 68 99 5 1 399 247 645 Thalassiosira pseudonana CCMP1335 RL10, ribosomal protein 10 60S large ribosomal subunit (RL10), mRNA blastn 402 327 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Thalassiosiraceae Thalassiosira Thalassiosira pseudonana
16759489 16759489 PRJNA1068830_P_NODE_36174_length_373_cov_1.653333_g35471_i0 PRJNA1068830 36174 373 1.653333 6.16693209 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 209 1.99e-49   NTclustered gi|219113426|ref|XM_002186261.1| 556484 g35471 i0 79.791 0.769436997319035 287 58 77 0 5 291 403 117 Phaeodactylum tricornutum CCAP 1055/1 predicted protein mRNA blastn 287 209 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
18034884 18034884 PRJNA1068830_P_NODE_5915_length_1067_cov_3.056338_g5422_i0 PRJNA1068830 5915 1067 3.0563380000000002 32.61112646 Thalassiosira pseudonana 35128 SAR_Eukaryotes SAR_Eukaryotes 761 0   NTclustered gi|224002994|ref|XM_002291133.1| 296543 g5422 i0 79.905 5.66635426429241 1055 198 98 14 14 1061 1269 2316 Thalassiosira pseudonana CCMP1335 translation factor tu domain 2 mRNA blastn 6046 761 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Thalassiosiraceae Thalassiosira Thalassiosira pseudonana
18035712 18035712 PRJNA1068830_P_NODE_9355_length_830_cov_6.557464_g8726_i0 PRJNA1068830 9355 830 6.557464 54.4269512 Nitzschia anatoliensis 2862141 SAR_Eukaryotes SAR_Eukaryotes 1384 0   NTclustered gi|2072715385|gb|MT740317.1| 2862141 g8726 i0 96.747 97.2590361445783 830 27 100 0 1 830 5253 6082 Nitzschia anatoliensis clone SZCZ E372 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 80725 1384 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Nitzschia Nitzschia anatoliensis
19308946 19308946 PRJNA1068830_P_NODE_66696_length_265_cov_1.380208_g65993_i0 PRJNA1068830 66696 265 1.380208 3.6575512 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 292 1.31e-74   NTclustered gi|219113438|ref|XM_002186267.1| 556484 g65993 i0 86.742 99.5547169811321 264 33 99 2 2 264 885 623 Phaeodactylum tricornutum CCAP 1055/1 translation elongation factor, EF-1, alpha subunit (EF-1), mRNA blastn 26382 292 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
21860217 21860217 PRJNA1068830_P_NODE_68758_length_260_cov_1.668449_g68055_i0 PRJNA1068830 68758 260 1.668449 4.3379674 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 248 2.8199999999999997e-61   NTclustered gi|219111198|ref|XM_002177315.1| 556484 g68055 i0 84.462 37.9576923076923 251 39 97 0 1 251 921 1171 Phaeodactylum tricornutum CCAP 1055/1 protein heat shock protein Hsp70 (HSP70A), mRNA blastn 9869 248 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
22691046 22691046 PRJNA1068830_P_NODE_38398_length_360_cov_5.031359_g37695_i0 PRJNA1068830 38398 360 5.031359 18.1128924 Bacillariaceae 33852 SAR_Eukaryotes SAR_Eukaryotes 665 0   NTclustered gi|2547135572|gb|OR286793.1| 2856 g37695 i0 100 99.3388888888889 360 0 100 0 1 360 368 9 Cylindrotheca closterium strain WAP12A small subunit ribosomal RNA gene, partial sequence blastn 35762 665 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Cylindrotheca Cylindrotheca closterium
23134698 23134698 PRJNA1068830_P_NODE_25019_length_467_cov_1.654822_g24317_i0 PRJNA1068830 25019 467 1.654822 7.72801874 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 346 1.86e-90   NTclustered gi|219114716|ref|XM_002178118.1| 556484 g24317 i0 81.687 1.85224839400428 415 76 89 0 31 445 222 636 Phaeodactylum tricornutum CCAP 1055/1 predicted protein partial mRNA blastn 865 346 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
23134772 23134772 PRJNA1068830_P_NODE_28639_length_429_cov_1.752809_g27936_i0 PRJNA1068830 28639 429 1.752809 7.51955061 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 508 2.04e-139   NTclustered gi|219113438|ref|XM_002186267.1| 556484 g27936 i0 88.235 90.7668997668998 425 50 99 0 5 429 717 293 Phaeodactylum tricornutum CCAP 1055/1 translation elongation factor, EF-1, alpha subunit (EF-1), mRNA blastn 38939 508 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
23135101 23135101 PRJNA1068830_P_NODE_42719_length_339_cov_1.218045_g42016_i0 PRJNA1068830 42719 339 1.218045 4.12917255 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 73.1 2.46e-8   NTclustered gi|219119586|ref|XM_002180514.1| 556484 g42016 i0 95.556 0.233038348082596 45 2 13 0 40 84 4 48 Phaeodactylum tricornutum CCAP 1055/1 predicted protein partial mRNA blastn 79 73.1 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
23135460 23135460 PRJNA1068830_P_NODE_57559_length_287_cov_1.135514_g56856_i0 PRJNA1068830 57559 287 1.135514 3.25892518 Sundstroemia setigera 3005 SAR_Eukaryotes SAR_Eukaryotes 276 1.45e-69   NTclustered gi|821563235|gb|KM360175.1| 3005 g56856 i0 86.454 83.0348432055749 251 34 87 0 4 254 303 53 Rhizosolenia setigera strain CCMP1694 actin mRNA, complete cds blastn 23831 276 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Rhizosoleniales Rhizosoleniaceae Sundstroemia Sundstroemia setigera
23135502 23135502 PRJNA1068830_P_NODE_59219_length_283_cov_1.114286_g58516_i0 PRJNA1068830 59219 283 1.114286 3.15342938 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 193 1.47e-44   NTclustered gi|219124033|ref|XM_002182282.1| 556484 g58516 i0 81.07 0.858657243816254 243 44 86 2 40 281 4978 4737 Phaeodactylum tricornutum CCAP 1055/1 predicted protein (CHC), mRNA blastn 243 193 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;