RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1068830" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1068830 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16760749 16760749 PRJNA1068830_P_NODE_85134_length_244_cov_0.912281_g84431_i0 PRJNA1068830 85134 244 0.912281 2.22596564 Eimeria mitis 44415 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.002   NTclustered gi|916497934|ref|XM_013494333.1| 44415 g84431 i0 83.607 0.25 61 8 25 2 33 92 1362 1421 Eimeria mitis CW-type zinc finger domain-containing protein, related (EMH_0083020), partial mRNA blastn 61 56.5 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria mitis
21859678 21859678 PRJNA1068830_P_NODE_47198_length_320_cov_1.153846_g46495_i0 PRJNA1068830 47198 320 1.153846 3.6923072 Plasmodium gonderi 77519 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.03   NTclustered gi|1620951189|ref|XM_028687656.1| 77519 g46495 i0 100 0.0875 28 0 9 0 195 222 1240 1267 Plasmodium gonderi hypothetical protein, conserved (PGO_090660), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium gonderi
21860223 21860223 PRJNA1068830_P_NODE_68878_length_260_cov_1.352941_g68175_i0 PRJNA1068830 68878 260 1.352941 3.5176466 Eimeria tenella 5802 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.002   NTclustered gi|916416283|ref|XM_013373919.1| 5802 g68175 i0 100 0.330769230769231 30 0 12 0 219 248 594 623 Eimeria tenella uncharacterized protein (ETH_00000385), partial mRNA blastn 86 56.5 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria tenella
22690928 22690928 PRJNA1068830_P_NODE_20878_length_521_cov_1.741071_g20177_i0 PRJNA1068830 20878 521 1.741071 9.07097991 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 58.4 0.001   NTclustered gi|2785758627|ref|XM_067219803.1| 5824 g20177 i0 97.059 0.130518234165067 34 1 7 0 301 334 1146 1113 Plasmodium brasilianum tyrosine kinase-like protein (MKS88_001144), partial mRNA blastn 68 58.4 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium brasilianum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;