RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1068830" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1068830 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
183052 183052 PRJNA1068830_P_NODE_52541_length_301_cov_1.824561_g51838_i0 PRJNA1068830 52541 301 1.824561 5.49192861 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 556 4.87e-154   NTclustered gi|341941922|gb|JN225540.1| 171953 g51838 i0 100 99.8870431893688 301 0 100 0 1 301 639 339 Uncultured Acidobacteria bacterium clone GSY-XJ5 16S ribosomal RNA gene, partial sequence blastn 30066 556 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
183192 183192 PRJNA1068830_P_NODE_58541_length_284_cov_2.213270_g57838_i0 PRJNA1068830 58541 284 2.21327 6.2856868 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 399 8.129999999999998e-107   NTclustered gi|2874253885|emb|OY970060.1| 171953 g57838 i0 94.318 97.4330985915493 264 9 92 5 23 284 4839641 4839900 MAG: uncultured Acidobacteriota bacterium isolate MFD01916.bin.c.4 genome assembly, chromosome: 1 blastn 27671 399 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;