RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1068830" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA1068830 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7835373 7835373 PRJNA1068830_P_NODE_46587_length_322_cov_1.558233_g45884_i0 PRJNA1068830 46587 322 1.558233 5.01751026 Cetobacterium somerae 188913 Bacteria Bacteria 579 1.1199999999999997e-160   NTclustered gi|2201062197|gb|CP092519.1| 188913 g45884 i0 99.068 435.667701863354 322 3 100 0 1 322 48888 49209 Cetobacterium somerae strain CS2105-BJ chromosome, complete genome blastn 140285 579 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
8667344 8667344 PRJNA1068830_P_NODE_38507_length_360_cov_1.404181_g37804_i0 PRJNA1068830 38507 360 1.404181 5.0550516 Cetobacterium 180162 Bacteria Bacteria 638 2.06e-178   NTclustered gi|2865368125|gb|CP122294.1| 188913 g37804 i0 98.611 509.986111111111 360 5 100 0 1 360 279697 279338 Cetobacterium somerae strain MSU41 plasmid p41_t2, complete sequence blastn 183595 638 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
15041814 15041814 PRJNA1068830_P_NODE_29892_length_418_cov_1.808696_g29189_i0 PRJNA1068830 29892 418 1.808696 7.56034928 Cetobacterium 180162 Bacteria Bacteria 767 0   NTclustered gi|2865368125|gb|CP122294.1| 188913 g29189 i0 99.761 509.942583732057 418 1 100 0 1 418 279119 278702 Cetobacterium somerae strain MSU41 plasmid p41_t2, complete sequence blastn 213156 767 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;