RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1068830" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 2 ✖

bioproject 1

  • PRJNA1068830 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10386973 10386973 PRJNA1068830_P_NODE_79609_length_248_cov_0.891429_g78906_i0 PRJNA1068830 79609 248 0.891429 2.21074392 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 154 5.98e-33   NTclustered gi|551555214|ref|XM_005764747.1| 280463 g78906 i0 80.5 63.5282258064516 200 39 81 0 49 248 1424 1225 Emiliania huxleyi CCMP1516 putative propionyl-CoA carboxylase (ACC-3), partial mRNA blastn 15755 154 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
21860213 21860213 PRJNA1068830_P_NODE_68618_length_260_cov_2.673797_g67915_i0 PRJNA1068830 68618 260 2.673797 6.9518722 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 86.1 2.34e-12   NTclustered gi|551583056|ref|XM_005776908.1| 280463 g67915 i0 83.696 0.707692307692308 92 13 35 2 170 260 398 308 Emiliania huxleyi CCMP1516 hypothetical protein mRNA blastn 184 86.1 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;