RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1068830" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA1068830 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7835269 7835269 PRJNA1068830_P_NODE_42107_length_342_cov_0.843866_g41404_i0 PRJNA1068830 42107 342 0.843866 2.88602172 Paramoeba perurans 437603 Discosea other_Eukaryota 449 9.8100000000000015e-122   NTclustered gi|156617355|gb|EU089662.1| 437603 g41404 i0 90.351 98.3099415204678 342 33 100 0 1 342 555 214 Neoparamoeba perurans actin mRNA, partial cds blastn 33622 449 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba perurans
18034643 18034643 PRJNA1068830_P_NODE_49575_length_311_cov_1.966387_g48872_i0 PRJNA1068830 49575 311 1.966387 6.11546357 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 239 2.08e-58   NTclustered gi|470442906|ref|XM_004339540.1| 1257118 g48872 i0 85.043 24.8842443729904 234 35 75 0 12 245 274 41 Acanthamoeba castellanii str. Neff 60S ribosomal protein, putative (ACA1_063390), partial mRNA blastn 7739 239 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
22691274 22691274 PRJNA1068830_P_NODE_83558_length_245_cov_0.906977_g82855_i0 PRJNA1068830 83558 245 0.906977 2.22209365 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 171 5.85e-38   NTclustered gi|470510585|ref|XM_004351497.1| 1257118 g82855 i0 79.518 91.5020408163265 249 43 100 8 1 245 831 587 Acanthamoeba castellanii str. Neff transport protein Sec61 alpha subunit, putative (ACA1_149400), partial mRNA blastn 22418 171 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;