RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1068513" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1068513 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4008301 4008301 PRJNA1068513_S_NODE_13084_length_244_cov_1.859649_g13038_i0 PRJNA1068513 13084 244 1.859649 4.53754356 Strongyloides ratti 34506 Nematoda Nematoda 161 3.5e-35   NTclustered gi|1376153327|ref|XM_024645269.1| 34506 g13038 i0 80.275 0.89344262295082 218 39 89 4 15 230 190 405 Strongyloides ratti Phosphate carrier protein, mitochondrial (SRAE_X000087200), partial mRNA blastn 218 161 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
4008335 4008335 PRJNA1068513_S_NODE_264_length_975_cov_2.633038_g242_i0 PRJNA1068513 264 975 2.633038 25.6721205 Strongyloides ratti 34506 Nematoda Nematoda 726 0   NTclustered gi|1376148845|ref|XM_024642710.1| 34506 g242 i0 81.954 86.9374358974359 870 145 89 9 1 864 864 1 Strongyloides ratti Tubulin beta-2A chain (SRAE_2000390300), partial mRNA blastn 84764 726 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
9109454 9109454 PRJNA1068513_S_NODE_7748_length_326_cov_5.000000_g7702_i0 PRJNA1068513 7748 326 5 16.3 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.031   NTclustered gi|687022652|emb|LM525566.1| 174720 g7702 i0 100 0.0858895705521472 28 0 9 0 77 104 58692 58665 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000003 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
14210512 14210512 PRJNA1068513_S_NODE_13652_length_233_cov_3.818750_g13606_i0 PRJNA1068513 13652 233 3.81875 8.8976875 Strongyloides papillosus 174720 Nematoda Nematoda 56.5 0.002   NTclustered gi|687022739|emb|LM525653.1| 174720 g13606 i0 100 0.412017167381974 30 0 13 0 76 105 57237 57266 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000058 blastn 96 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
18033621 18033621 PRJNA1068513_S_NODE_5655_length_382_cov_2.572816_g5609_i0 PRJNA1068513 5655 382 2.572816 9.82815712 Necator americanus 51031 Nematoda Nematoda 58.4 7.83e-4   NTclustered gi|2707571125|ref|XM_013453164.2| 51031 g5609 i0 100 0.272251308900524 31 0 8 0 180 210 2703 2673 Necator americanus uncharacterized protein (RB195_009825), partial mRNA blastn 104 58.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus
19307398 19307398 PRJNA1068513_S_NODE_10796_length_271_cov_1.560606_g10750_i0 PRJNA1068513 10796 271 1.560606 4.22924226 Caenorhabditis elegans 6239 Nematoda Nematoda 52.8 0.025   NTclustered gi|351060790|emb|FO081018.1| 6239 g10750 i0 100 0.413284132841328 28 0 10 0 180 207 1194 1221 Caenorhabditis elegans Cosmid F17E9, complete sequence blastn 112 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
23134186 23134186 PRJNA1068513_S_NODE_3199_length_487_cov_6.214976_g3154_i0 PRJNA1068513 3199 487 6.214976 30.26693312 Caenorhabditis elegans 6239 Nematoda Nematoda 52.8 0.047   NTclustered gi|413005220|emb|Z74031.2| 6239 g3154 i0 100 0.114989733059548 28 0 6 0 229 256 19584 19611 Caenorhabditis elegans Cosmid F32D8, complete sequence blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;