RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1068513" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA1068513 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12492467 12492467 PRJNA1068513_S_NODE_4450_length_428_cov_1.436620_g4405_i0 PRJNA1068513 4450 428 1.43662 6.1487336 Cetobacterium 180162 Bacteria Bacteria 52.8 0.041   NTclustered gi|2666488225|gb|CP143319.1| 188913 g4405 i0 100 0.261682242990654 28 0 7 0 80 107 292338 292365 Cetobacterium somerae strain ceto chromosome, complete genome blastn 112 52.8 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
12935588 12935588 PRJNA1068513_S_NODE_1951_length_571_cov_9.859438_g1909_i0 PRJNA1068513 1951 571 9.859438 56.29739098 Cetobacterium somerae 188913 Bacteria Bacteria 917 0   NTclustered gi|2201062197|gb|CP092519.1| 188913 g1909 i0 98.464 456.411558669002 521 7 91 1 46 566 49388 48869 Cetobacterium somerae strain CS2105-BJ chromosome, complete genome blastn 260611 917 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
20583040 20583040 PRJNA1068513_S_NODE_5157_length_400_cov_1.431193_g5112_i0 PRJNA1068513 5157 400 1.431193 5.724772 Fusobacterium hominis 2764326 Bacteria Bacteria 52.8 0.038   NTclustered gi|1897733338|gb|CP060637.1| 2764326 g5112 i0 100 0.07 28 0 7 0 257 284 226473 226500 Fusobacterium hominis strain NSJ-57 chromosome, complete genome blastn 28 52.8 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium hominis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;