RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1068513" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA1068513 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1456583 1456583 PRJNA1068513_S_NODE_5222_length_397_cov_22.453704_g5177_i0 PRJNA1068513 5222 397 22.453704 89.14120488 Monoraphidium neglectum 145388 Plants Plants 54.7 0.011   NTclustered gi|926786903|ref|XM_014046472.1| 145388 g5177 i0 100 0.0730478589420655 29 0 7 0 4 32 479 451 Monoraphidium neglectum hypothetical protein mRNA blastn 29 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
15484610 15484610 PRJNA1068513_S_NODE_5873_length_376_cov_2.316832_g5827_i0 PRJNA1068513 5873 376 2.316832 8.71128832 Tetradesmus dimorphus 119574 Plants Plants 63.9 1.65e-5   NTclustered gi|2692951716|ref|NC_086754.1| 119574 g5827 i0 100 0.0904255319148936 34 0 9 0 27 60 71182 71215 Tetradesmus dimorphus strain FBCC-A0330 chloroplast, complete genome blastn 34 63.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus dimorphus
19307414 19307414 PRJNA1068513_S_NODE_12936_length_245_cov_5.023256_g12890_i0 PRJNA1068513 12936 245 5.023256 12.3069772 Auxenochlorella protothecoides 3075 Plants Plants 104 6.02e-18   NTclustered gi|760447288|ref|XM_011402411.1| 3075 g12890 i0 87.64 42.1918367346939 89 11 36 0 156 244 1652 1564 Auxenochlorella protothecoides Peptidylprolyl isomerase domain and WD repeat-containing protein 1 partial mRNA blastn 10337 104 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;