RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1068513" and tax_clade = "PVC group"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA1068513 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11660540 11660540 PRJNA1068513_S_NODE_7070_length_343_cov_2.422222_g7024_i0 PRJNA1068513 7070 343 2.422222 8.30822146 Candidatus Rhabdochlamydia porcellionis 225148 Bacteria Bacteria 52.8 0.032   NTclustered gi|2082223669|gb|CP075585.1| 225148 g7024 i0 100 0.0816326530612245 28 0 8 0 48 75 759677 759650 Candidatus Rhabdochlamydia porcellionis strain 15C chromosome, complete genome blastn 28 52.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae Candidatus Rhabdochlamydia Candidatus Rhabdochlamydia porcellionis
14210619 14210619 PRJNA1068513_S_NODE_9952_length_284_cov_1.379147_g9906_i0 PRJNA1068513 9952 284 1.379147 3.91677748 Planctomycetia bacterium 2052181 Bacteria Bacteria 52.8 0.026   NTclustered gi|1927964719|gb|CP054188.1| 2052181 g9906 i0 100 0.0985915492957746 28 0 10 0 112 139 210925 210952 MAG: Planctomycetia bacterium isolate H1_AMX1 chromosome, complete genome blastn 28 52.8 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia       Planctomycetia bacterium
16758743 16758743 PRJNA1068513_S_NODE_12934_length_245_cov_5.523256_g12888_i0 PRJNA1068513 12934 245 5.523256 13.5319772 Candidatus Jettenia caeni 247490 Bacteria Bacteria 52.8 0.022   NTclustered gi|2556874801|gb|CP129467.1| 247490 g12888 i0 100 0.114285714285714 28 0 11 0 63 90 623947 623920 MAG: Candidatus Jettenia caeni isolate YC-1 chromosome, complete genome blastn 28 52.8 1 Bacteria PVC group Pseudomonadati Planctomycetota Candidatus Brocadiia Candidatus Brocadiales Candidatus Brocadiaceae Candidatus Jettenia Candidatus Jettenia caeni

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;