RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1068513" and tax_clade = "Cyanobacteriota/Melainabacteria group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Cyanobacteriota/Melainabacteria group · 2 ✖

bioproject 1

  • PRJNA1068513 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16758737 16758737 PRJNA1068513_S_NODE_1234_length_652_cov_3.880829_g1194_i0 PRJNA1068513 1234 652 3.880829 25.30300508 cyanobacterium endosymbiont of Epithemia clementina EcSB 3034674 Bacteria Bacteria 54.7 0.018   NTclustered gi|2499392380|gb|CP123991.1| 3034674 g1194 i0 100 0.044478527607362 29 0 4 0 150 178 557534 557506 Cyanobacterium endosymbiont of Epithemia clementina EcSB isolate Gazos Creek chromosome, complete genome blastn 29 54.7 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota         cyanobacterium endosymbiont of Epithemia clementina EcSB
20140062 20140062 PRJNA1068513_S_NODE_6776_length_351_cov_1.359712_g6730_i0 PRJNA1068513 6776 351 1.359712 4.77258912 Synechococcales 1890424 Bacteria Bacteria 52.8 0.033   NTclustered gi|2895565184|gb|CP138934.1| 59925 g6730 i0 100 0.239316239316239 28 0 8 0 205 232 925807 925834 Prochlorococcus marinus str. GP2 chromosome, complete genome blastn 84 52.8 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;