RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1068513" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA1068513 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
181969 181969 PRJNA1068513_S_NODE_6301_length_364_cov_2.175258_g6255_i0 PRJNA1068513 6301 364 2.175258 7.91793912 Angulamoeba sp. F2 1654984 Evosea other_Eukaryota 608 1.629999999999999e-169   NTclustered gi|821394116|gb|KP864085.1| 1654984 g6255 i0 96.97 73.3736263736264 363 10 99 1 2 364 162 523 Angulamoeba sp. F2 small subunit ribosomal RNA gene, partial sequence blastn 26708 608 1 Eukaryota Amoebozoa   Evosea Variosea     Angulamoeba Angulamoeba sp. F2
1456480 1456480 PRJNA1068513_S_NODE_11002_length_268_cov_1.287179_g10956_i0 PRJNA1068513 11002 268 1.287179 3.44963972 Acytostelium subglobosum 361139 Evosea other_Eukaryota 56.5 0.002   NTclustered gi|831775930|ref|XM_012899194.1| 1410327 g10956 i0 100 0.111940298507463 30 0 11 0 154 183 1476 1505 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 30 56.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
13766948 13766948 PRJNA1068513_S_NODE_8911_length_303_cov_1.860870_g8865_i0 PRJNA1068513 8911 303 1.86087 5.6384361 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 52.8 0.028   NTclustered gi|470253207|ref|XM_004359645.1| 261658 g8865 i0 100 0.277227722772277 28 0 9 0 260 287 891 918 Cavenderia fasciculata uncharacterized protein (DFA_01737), partial mRNA blastn 84 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;