RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1067443" and tax_phylum = "Nitrospirota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1067443 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15484075 15484075 PRJNA1067443_P_NODE_1313_length_531_cov_7.187773_g1295_i0 PRJNA1067443 1313 531 7.187773 38.16707463 Nitrospira sp. 70125 Bacteria Bacteria 532 1.53e-146   NTclustered gi|2194428397|gb|CP092079.1| 70125 g1295 i0 86.503 1.51977401129944 489 60 92 6 23 508 3575485 3575970 MAG: Nitrospira sp. isolate UBC3 chromosome blastn 807 532 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
19307077 19307077 PRJNA1067443_P_NODE_19876_length_245_cov_1.656977_g19858_i0 PRJNA1067443 19876 245 1.656977 4.05959365 Nitrospira sp. 70125 Bacteria Bacteria 198 2.68e-46   NTclustered gi|2863125063|dbj|AP038805.1| 70125 g19858 i0 86.264 0.742857142857143 182 25 74 0 53 234 2630487 2630668 MAG: Nitrospira sp. AFB01 DNA, complete genome blastn 182 198 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;