RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1067443" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1067443 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1456050 1456050 PRJNA1067443_P_NODE_14802_length_258_cov_1.416216_g14784_i0 PRJNA1067443 14802 258 1.416216 3.65383728 Cystobacter fuscus 43 Bacteria Bacteria 195 3.69e-45   NTclustered gi|1243034522|gb|CP022098.1| 43 g14784 i0 80.952 17.4961240310078 252 43 96 3 3 250 8902131 8902381 Cystobacter fuscus strain DSM 52655 chromosome, complete genome blastn 4514 195 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Cystobacter Cystobacter fuscus
5284165 5284165 PRJNA1067443_P_NODE_14725_length_258_cov_1.789189_g14707_i0 PRJNA1067443 14725 258 1.789189 4.61610762 Nannocystis punicea 2995304 Bacteria Bacteria 152 2.2499999999999995e-32   NTclustered gi|2415023655|gb|CP114040.1| 2995304 g14707 i0 88.281 38.1317829457364 128 13 49 2 113 239 9883858 9883984 Nannocystis poenicansa strain FL3 chromosome, complete genome blastn 9838 152 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Nannocystis Nannocystis punicea
18033086 18033086 PRJNA1067443_P_NODE_12635_length_269_cov_3.994898_g12617_i0 PRJNA1067443 12635 269 3.994898 10.74627562 Myxococcus xanthus 34 Bacteria Bacteria 444 3.48e-120   NTclustered gi|47778677|gb|AY033403.2| 34 g12617 i0 96 29.6022304832714 275 5 100 6 1 269 2305 2579 Myxococcus xanthus USC3-1p, USC3-2p, USC3-3p, milk-clotting protease USC3-4p (cltC), and USC3-5p genes, complete cds blastn 7963 444 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus xanthus
24407497 24407497 PRJNA1067443_P_NODE_3580_length_395_cov_0.956522_g3562_i0 PRJNA1067443 3580 395 0.956522 3.7782619 Nannocystis punicea 2995304 Bacteria Bacteria 185 3.569999999999999e-42   NTclustered gi|2415023655|gb|CP114040.1| 2995304 g3562 i0 79.359 90.9898734177215 281 44 70 13 119 395 1428167 1428437 Nannocystis poenicansa strain FL3 chromosome, complete genome blastn 35941 185 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Nannocystis Nannocystis punicea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;