RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1067443" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1067443 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9109080 9109080 PRJNA1067443_P_NODE_21548_length_243_cov_0.905882_g21530_i0 PRJNA1067443 21548 243 0.905882 2.20129326 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 161 3.4899999999999997e-35   NTclustered gi|575456455|gb|CP007128.1| 861299 g21530 i0 95.098 0.843621399176955 102 5 42 0 1 102 3734133 3734032 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 205 161 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
10384631 10384631 PRJNA1067443_P_NODE_1249_length_539_cov_1.654506_g1231_i0 PRJNA1067443 1249 539 1.654506 8.91778734 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 436 1.25e-117   NTclustered gi|575462059|gb|CP007130.1| 861299 g1231 i0 81.502 11.9146567717996 546 87 100 14 1 539 189912 189374 Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence blastn 6422 436 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
19307306 19307306 PRJNA1067443_P_NODE_7976_length_305_cov_2.612069_g7958_i0 PRJNA1067443 7976 305 2.612069 7.96681045 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 350 9e-92   NTclustered gi|575462059|gb|CP007130.1| 861299 g7958 i0 87.748 36.1508196721311 302 33 98 4 6 305 188758 188459 Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence blastn 11026 350 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;