RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1067370" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA1067370 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
180834 180834 PRJNA1067370_P_NODE_34901_length_336_cov_1.076046_g34353_i0 PRJNA1067370 34901 336 1.076046 3.61551456 Rhizamoeba saxonica 200886 Tubulinea other_Eukaryota 425 1.62e-114   NTclustered gi|423292021|gb|JQ519456.1| 200886 g34353 i0 89.759 86.7261904761905 332 34 99 0 5 336 759 428 Rhizamoeba saxonica clone JG10.147_g3 actin gene, partial cds blastn 29140 425 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Rhizamoeba Rhizamoeba saxonica
11216696 11216696 PRJNA1067370_P_NODE_59789_length_280_cov_1.376812_g59240_i0 PRJNA1067370 59789 280 1.376812 3.8550736 Hartmannellidae 5776 Tubulinea other_Eukaryota 507 4.58e-139   NTclustered gi|11527309|gb|AF293902.1|AF293902 136464 g59240 i0 99.286 90.6107142857143 280 2 100 0 1 280 1105 826 Saccamoeba limax small subunit ribosomal RNA gene, complete sequence blastn 25371 512 0.990234375 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba limax
18032638 18032638 PRJNA1067370_P_NODE_49415_length_298_cov_1.026667_g48867_i0 PRJNA1067370 49415 298 1.026667 3.05946766 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 496 1.06e-135   NTclustered gi|421976286|gb|JQ519399.1| 1078836 g48867 i0 96.644 6.73154362416107 298 10 100 0 1 298 461 164 Cryptodifflugia operculata clone JG11.5_7 14-3-3 protein gene, partial cds blastn 2006 496 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
21857771 21857771 PRJNA1067370_P_NODE_56438_length_285_cov_1.617925_g55889_i0 PRJNA1067370 56438 285 1.617925 4.61108625 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 505 1.6799999999999995e-138   NTclustered gi|909719645|gb|KT185625.1| 5778 g55889 i0 98.596 24.540350877193 285 4 100 0 1 285 7050 6766 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 6994 505 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
25239601 25239601 PRJNA1067370_P_NODE_90320_length_248_cov_0.880000_g89771_i0 PRJNA1067370 90320 248 0.88 2.1824 Cryptodifflugia 1078833 Tubulinea other_Eukaryota 436 5.3e-118   NTclustered gi|345294024|gb|JF694280.1| 1078836 g89771 i0 98.387 55.6088709677419 248 4 100 0 1 248 313 66 Cryptodifflugia operculata small subunit ribosomal RNA gene, partial sequence blastn 13791 436 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;