contig_metadata
13 rows where analysis = "blastn", bioproject = "PRJNA1067370" and tax_phylum = "Spirochaetota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3563774 | 3563774 | PRJNA1067370_P_NODE_16763_length_454_cov_1.572178_g16215_i0 | PRJNA1067370 | 16763 | 454 | 1.572178 | 7.13768812 | Spirochaeta | 146 | Bacteria | Bacteria | 512 | 1.68e-140 | NTclustered | gi|507148391|ref|NR_103194.1| | 46355 | g16215 | i0 | 87.033 | 611.057268722467 | 455 | 57 | 99 | 2 | 1 | 453 | 2074 | 2528 | Spirochaeta africana strain Z-7692 23S ribosomal RNA gene, complete sequence | blastn | 277420 | 516 | 0.992248062015504 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Spirochaetaceae | Spirochaeta | Spirochaeta africana | ||
| 6559193 | 6559193 | PRJNA1067370_S_NODE_1746_length_379_cov_2.039216_g1720_i0 | PRJNA1067370 | 1746 | 379 | 2.039216 | 7.72862864 | Treponema parvum | 138851 | Bacteria | Bacteria | 346 | 1.4799999999999999e-90 | NTclustered | gi|2023444933|gb|CP054257.1| | 138851 | g1720 | i0 | 83.377 | 161.290237467018 | 385 | 52 | 100 | 11 | 1 | 379 | 1517776 | 1518154 | Treponema parvum strain ATCC 700773 chromosome, complete genome | blastn | 61129 | 346 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema parvum | ||
| 7833622 | 7833622 | PRJNA1067370_P_NODE_78007_length_253_cov_0.977778_g77458_i0 | PRJNA1067370 | 78007 | 253 | 0.977778 | 2.47377834 | Spirochaetia bacterium | 2053615 | Bacteria | Bacteria | 222 | 1.65e-53 | NTclustered | gi|2891483193|emb|OZ220223.1| | 2053615 | g77458 | i0 | 82.946 | 136.158102766798 | 258 | 32 | 99 | 11 | 1 | 252 | 1056274 | 1056525 | MAG: Spirochaetia bacterium isolate 03e4f5d5-dacf-4468-93a7-e7b19fb300a1 genome assembly, chromosome: 2 | blastn | 34448 | 222 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetia bacterium | |||||
| 9108582 | 9108582 | PRJNA1067370_P_NODE_65988_length_271_cov_0.984848_g65439_i0 | PRJNA1067370 | 65988 | 271 | 0.984848 | 2.66893808 | Breznakiella homolactica | 2798577 | Bacteria | Bacteria | 339 | 1.7e-88 | NTclustered | gi|2093987262|gb|CP067089.2| | 2798577 | g65439 | i0 | 89.299 | 168.708487084871 | 271 | 27 | 99 | 2 | 1 | 270 | 9825 | 9556 | Breznakiella homolactica strain RmG30 chromosome, complete genome | blastn | 45720 | 339 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Breznakiellaceae | Breznakiella | Breznakiella homolactica | ||
| 12934676 | 12934676 | PRJNA1067370_P_NODE_54171_length_289_cov_0.893519_g53622_i0 | PRJNA1067370 | 54171 | 289 | 0.893519 | 2.58226991 | Treponemataceae bacterium | 2854022 | Bacteria | Bacteria | 473 | 4.819999999999999e-129 | NTclustered | gi|2814788384|emb|OY762953.2| | 2854022 | g53622 | i0 | 96.194 | 193.813148788927 | 289 | 11 | 100 | 0 | 1 | 289 | 1491109 | 1490821 | MAG: Treponemataceae bacterium isolate a6accef0-0fd1-414a-935d-742eec6b5613 genome assembly, chromosome: 1 | blastn | 56012 | 473 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponemataceae bacterium | |||
| 15483539 | 15483539 | PRJNA1067370_P_NODE_29913_length_356_cov_1.074205_g29365_i0 | PRJNA1067370 | 29913 | 356 | 1.074205 | 3.8241698 | uncultured Sphaerochaeta sp. | 886478 | Bacteria | Bacteria | 320 | 8.369999999999998e-83 | NTclustered | gi|2621785415|emb|OY781873.1| | 886478 | g29365 | i0 | 83.106 | 168.63202247191 | 367 | 46 | 100 | 16 | 1 | 356 | 1914515 | 1914154 | MAG: uncultured Sphaerochaeta sp. isolate d3c3752c-658c-4035-93a5-350d78b9f8a8 genome assembly, chromosome: 1 | blastn | 60033 | 320 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Sphaerochaetaceae | Sphaerochaeta | uncultured Sphaerochaeta sp. | ||
| 15483604 | 15483604 | PRJNA1067370_P_NODE_39353_length_321_cov_1.387097_g38805_i0 | PRJNA1067370 | 39353 | 321 | 1.387097 | 4.45258137 | Brachyspira hampsonii | 1287055 | Bacteria | Bacteria | 52.8 | 0.03 | NTclustered | gi|1214564172|gb|CP019914.1| | 1287055 | g38805 | i0 | 88.372 | 0.133956386292835 | 43 | 5 | 13 | 0 | 9 | 51 | 1999824 | 1999782 | Brachyspira hampsonii strain NSH-16 chromosome, complete genome | blastn | 43 | 52.8 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Brachyspirales | Brachyspiraceae | Brachyspira | Brachyspira hampsonii | ||
| 15483742 | 15483742 | PRJNA1067370_P_NODE_62013_length_277_cov_1.039216_g61464_i0 | PRJNA1067370 | 62013 | 277 | 1.039216 | 2.87862832 | Treponemataceae bacterium | 2854022 | Bacteria | Bacteria | 390 | 4.749999999999999e-104 | NTclustered | gi|2814788384|emb|OY762953.2| | 2854022 | g61464 | i0 | 92.115 | 119.176895306859 | 279 | 19 | 100 | 2 | 1 | 277 | 1490252 | 1489975 | MAG: Treponemataceae bacterium isolate a6accef0-0fd1-414a-935d-742eec6b5613 genome assembly, chromosome: 1 | blastn | 33012 | 390 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponemataceae bacterium | |||
| 16757987 | 16757987 | PRJNA1067370_P_NODE_73714_length_259_cov_1.451613_g73165_i0 | PRJNA1067370 | 73714 | 259 | 1.451613 | 3.75967767 | Treponema medium | 58231 | Bacteria | Bacteria | 479 | 9.13e-131 | NTclustered | gi|1996296230|gb|CP031393.1| | 58231 | g73165 | i0 | 100 | 193.888030888031 | 259 | 0 | 100 | 0 | 1 | 259 | 1012718 | 1012976 | Treponema medium strain ATCC 700293 chromosome, complete genome | blastn | 50217 | 479 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema medium | ||
| 16758059 | 16758059 | PRJNA1067370_P_NODE_84614_length_250_cov_0.870056_g84065_i0 | PRJNA1067370 | 84614 | 250 | 0.870056 | 2.17514 | Spirochaetia bacterium | 2053615 | Bacteria | Bacteria | 52.8 | 0.023 | NTclustered | gi|2621706806|emb|OY764868.1| | 2053615 | g84065 | i0 | 100 | 0.112 | 28 | 0 | 11 | 0 | 119 | 146 | 461772 | 461745 | MAG: Spirochaetia bacterium isolate 011fa16d-6e6a-4572-b8a7-e5a7f8581680 genome assembly, chromosome: 1 | blastn | 28 | 52.8 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetia bacterium | |||||
| 18032603 | 18032603 | PRJNA1067370_P_NODE_44495_length_310_cov_2.223629_g43947_i0 | PRJNA1067370 | 44495 | 310 | 2.223629 | 6.8932499 | Borreliella tanukii | 56146 | Bacteria | Bacteria | 52.8 | 0.029 | NTclustered | gi|2918227553|gb|CP179589.1| | 56146 | g43947 | i0 | 90.476 | 0.135483870967742 | 42 | 1 | 13 | 3 | 259 | 297 | 25025 | 24984 | Borreliella tanukii strain TanegashimaAS13 plasmid lp36, complete sequence | blastn | 42 | 52.8 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Borreliaceae | Borreliella | Borreliella tanukii | ||
| 19306495 | 19306495 | PRJNA1067370_P_NODE_4396_length_836_cov_2.318480_g3923_i0 | PRJNA1067370 | 4396 | 836 | 2.31848 | 19.3824928 | Salinispira pacifica | 1307761 | Bacteria | Bacteria | 852 | 0 | NTclustered | gi|565679415|gb|CP006939.1| | 1307761 | g3923 | i0 | 85.34 | 237.864832535885 | 839 | 106 | 99 | 12 | 4 | 835 | 385017 | 385845 | Salinispira pacifica strain L21-RPul-D2, complete genome | blastn | 198855 | 852 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Spirochaetaceae | Salinispira | Salinispira pacifica | ||
| 21415235 | 21415235 | PRJNA1067370_P_NODE_32277_length_346_cov_1.358974_g31729_i0 | PRJNA1067370 | 32277 | 346 | 1.358974 | 4.70205004 | Treponema | 157 | Bacteria | Bacteria | 640 | 5.4999999999999996e-179 | NTclustered | gi|1996291085|gb|CP027017.1| | 58231 | g31729 | i0 | 100 | 194.060693641618 | 346 | 0 | 100 | 0 | 1 | 346 | 1014721 | 1015066 | Treponema medium strain T19 chromosome, complete genome | blastn | 67145 | 640 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema medium |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;