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contig_metadata

16 rows where analysis = "blastn", bioproject = "PRJNA1067370" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 16 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1067370 · 16 ✖

analysis 1

  • blastn · 16 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
181092 181092 PRJNA1067370_P_NODE_72521_length_261_cov_1.186170_g71972_i0 PRJNA1067370 72521 261 1.18617 3.0959037 Caenorhabditis elegans 6239 Nematoda Nematoda 52.8 0.024   NTclustered gi|687865513|emb|LK927530.1| 6239 g71972 i0 100 0.21455938697318 28 0 11 0 45 72 91312 91285 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000001 blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
1455194 1455194 PRJNA1067370_P_NODE_102622_length_244_cov_1.350877_g102073_i0 PRJNA1067370 102622 244 1.350877 3.29613988 Caenorhabditis elegans 6239 Nematoda Nematoda 150 7.589999999999999e-32   NTclustered gi|1972232684|ref|NM_060327.8| 6239 g102073 i0 79.263 27.155737704918 217 43 89 2 5 220 250 35 Caenorhabditis elegans Large ribosomal subunit protein eL30 (rpl-30), mRNA blastn 6626 150 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
4007159 4007159 PRJNA1067370_P_NODE_20864_length_412_cov_1.817109_g20316_i0 PRJNA1067370 20864 412 1.817109 7.48648908 Pristionchus pauli 376545 Nematoda Nematoda 283 1.29e-71   NTclustered gi|150982019|gb|EF634598.1| 376545 g20316 i0 81.481 5.09223300970874 351 59 84 6 3 350 384 37 Pristionchus pauli large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 2098 283 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pauli
4007512 4007512 PRJNA1067370_P_NODE_69424_length_265_cov_2.187500_g68875_i0 PRJNA1067370 69424 265 2.1875 5.796875 Leptojacobus dorci 1463561 Nematoda Nematoda 150 8.349999999999998e-32   NTclustered gi|675118843|gb|KJ877301.1| 1463561 g68875 i0 84.314 15.9849056603774 153 24 58 0 29 181 207 55 Leptojacobus dorci strain RS9005 large subunit ribosomal protein 2 (rpl-2) mRNA, partial cds blastn 4236 150 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Leptojacobus Leptojacobus dorci
5283586 5283586 PRJNA1067370_P_NODE_27365_length_368_cov_3.033898_g26817_i0 PRJNA1067370 27365 368 3.033898 11.16474464 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 680 0   NTclustered gi|2095998828|gb|MZ708958.1| 1904821 g26817 i0 100 52.3478260869565 368 0 100 0 1 368 2677 3044 Pseudocapillaria tomentosa mitochondrion, complete genome blastn 19264 680 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa
5283807 5283807 PRJNA1067370_P_NODE_64805_length_272_cov_2.211055_g64256_i0 PRJNA1067370 64805 272 2.211055 6.0140696 Caenorhabditis remanei 31234 Nematoda Nematoda 187 6.559999999999998e-43   NTclustered gi|2445366864|ref|XM_003111767.2| 31234 g64256 i0 79.259 24.4889705882353 270 54 99 2 1 269 868 1136 Caenorhabditis remanei uncharacterized protein (GCK72_010694), partial mRNA blastn 6661 187 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
11659526 11659526 PRJNA1067370_P_NODE_48650_length_299_cov_2.044248_g48102_i0 PRJNA1067370 48650 299 2.044248 6.11230152 Strongyloides ratti 34506 Nematoda Nematoda 150 9.58e-32   NTclustered gi|1376144539|ref|XM_024652732.1| 34506 g48102 i0 82.456 0.819397993311037 171 30 57 0 33 203 243 73 Strongyloides ratti 40S ribosomal protein S14 (SRAE_2000174400), partial mRNA blastn 245 150 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
12934503 12934503 PRJNA1067370_P_NODE_28751_length_361_cov_3.868056_g28203_i0 PRJNA1067370 28751 361 3.868056 13.96368216 Caenorhabditis briggsae 6238 Nematoda Nematoda 303 8.56e-78   NTclustered gi|268537031|ref|XM_002633606.1| 6238 g28203 i0 85.324 76.3351800554017 293 43 81 0 67 359 55 347 Caenorhabditis briggsae Protein CBR-RPS-23 (Cbr-rps-23), partial mRNA blastn 27557 303 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
12934798 12934798 PRJNA1067370_P_NODE_72151_length_261_cov_1.638298_g71602_i0 PRJNA1067370 72151 261 1.638298 4.27595778 Strongyloides ratti 34506 Nematoda Nematoda 198 2.89e-46   NTclustered gi|1376154927|ref|XM_024651418.1| 34506 g71602 i0 82.328 168.114942528736 232 37 88 4 1 230 230 1 Strongyloides ratti Histone H3 (SRAE_X000165500), partial mRNA blastn 43878 198 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
14209375 14209375 PRJNA1067370_P_NODE_15832_length_466_cov_0.987277_g15284_i0 PRJNA1067370 15832 466 0.987277 4.60071082 Strongyloides ratti 34506 Nematoda Nematoda 311 6.770000000000001e-80   NTclustered gi|1376155483|ref|XM_024654540.1| 34506 g15284 i0 79.015 72.9206008583691 467 88 99 10 5 466 2746 2285 Strongyloides ratti Plasma membrane calcium-transporting ATPase 3 (SRAE_X000193300), partial mRNA blastn 33981 311 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
14209694 14209694 PRJNA1067370_P_NODE_63352_length_275_cov_0.995050_g62803_i0 PRJNA1067370 63352 275 0.99505 2.7363875 Strongyloides ratti 34506 Nematoda Nematoda 172 1.86e-38   NTclustered gi|1376151557|ref|XM_024644287.1| 34506 g62803 i0 81.951 4.07636363636364 205 35 74 2 70 273 909 706 Strongyloides ratti Zinc finger protein sens (SRAE_2000529000), partial mRNA blastn 1121 172 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
15483802 15483802 PRJNA1067370_P_NODE_70933_length_263_cov_1.473684_g70384_i0 PRJNA1067370 70933 263 1.473684 3.87578892 Strongyloides papillosus 174720 Nematoda Nematoda 76.8 1.42e-9   NTclustered gi|687022665|emb|LM525579.1| 174720 g70384 i0 85.915 0.269961977186312 71 10 27 0 16 86 243529 243599 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000019 blastn 71 76.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
16757582 16757582 PRJNA1067370_P_NODE_16454_length_458_cov_1.400000_g15906_i0 PRJNA1067370 16454 458 1.4 6.412 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.044   NTclustered gi|690018461|emb|LM525699.1| 174720 g15906 i0 100 0.0611353711790393 28 0 6 0 51 78 19086 19059 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000095 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
18032423 18032423 PRJNA1067370_P_NODE_21875_length_404_cov_3.486405_g21327_i0 PRJNA1067370 21875 404 3.486405 14.0850762 Caenorhabditis briggsae 6238 Nematoda Nematoda 215 4.67e-51   NTclustered gi|268537031|ref|XM_002633606.1| 6238 g21327 i0 80.882 13.7747524752475 272 52 67 0 17 288 377 106 Caenorhabditis briggsae Protein CBR-RPS-23 (Cbr-rps-23), partial mRNA blastn 5565 215 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
20581979 20581979 PRJNA1067370_P_NODE_38597_length_323_cov_2.192000_g38049_i0 PRJNA1067370 38597 323 2.192 7.08016 Onchocerca volvulus 6282 Nematoda Nematoda 230 1.3099999999999995e-55   NTclustered gi|546000|gb|S70027.1| 6282 g38049 i0 81.919 36.0278637770898 271 49 84 0 20 290 324 54 hsp70 [Onchocerca volvulus, mRNA Partial, 324 nt] blastn 11637 230 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Onchocerca Onchocerca volvulus
23133383 23133383 PRJNA1067370_P_NODE_78859_length_251_cov_2.089888_g78310_i0 PRJNA1067370 78859 251 2.089888 5.24561888 Caenorhabditis elegans 6239 Nematoda Nematoda 52.8 0.023   NTclustered gi|412976662|emb|AL110487.2| 6239 g78310 i0 100 0.223107569721116 28 0 11 0 44 71 69531 69504 Caenorhabditis elegans YAC Y39E4B, complete sequence blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;