RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1067370" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1067370 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1455497 1455497 PRJNA1067370_P_NODE_32462_length_345_cov_1.702206_g31914_i0 PRJNA1067370 32462 345 1.702206 5.8726107 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 322 2.25e-83   NTclustered gi|2874254107|emb|OY970192.1| 412054 g31914 i0 90.04 13.4057971014493 251 21 72 4 1 250 1593422 1593669 MAG: uncultured Gemmatimonadales bacterium isolate MFD01721.bin.c.5 genome assembly, chromosome: 1 blastn 4625 322 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
2731059 2731059 PRJNA1067370_P_NODE_106763_length_243_cov_0.905882_g106214_i0 PRJNA1067370 106763 243 0.905882 2.20129326 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 100 7.71e-17   NTclustered gi|2108049360|gb|CP070758.1| 2026742 g106214 i0 93.939 1.34567901234568 66 4 27 0 178 243 4860435 4860500 MAG: Gemmatimonadetes bacterium isolate bin29 chromosome blastn 327 100 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
9108399 9108399 PRJNA1067370_P_NODE_33968_length_339_cov_1.687970_g33420_i0 PRJNA1067370 33968 339 1.68797 5.7222183 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 438 2.1e-118   NTclustered gi|2874253728|emb|OY969570.1| 412054 g33420 i0 90.237 130.407079646018 338 30 99 3 1 337 172400 172065 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 44208 438 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
16757739 16757739 PRJNA1067370_P_NODE_34274_length_338_cov_1.452830_g33726_i0 PRJNA1067370 34274 338 1.45283 4.9105654 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 398 3.559999999999998e-106   NTclustered gi|575456455|gb|CP007128.1| 861299 g33726 i0 88.235 90.1360946745562 340 31 99 7 2 338 3042808 3042475 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 30466 398 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;