RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

18 rows where analysis = "blastn", bioproject = "PRJNA1067370" and tax_phylum = "Discosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Discosea · 18 ✖

tax_clade 1

bioproject 1

  • PRJNA1067370 · 18 ✖

analysis 1

  • blastn · 18 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
181095 181095 PRJNA1067370_P_NODE_72861_length_260_cov_1.647059_g72312_i0 PRJNA1067370 72861 260 1.647059 4.2823534 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 52.8 0.024   NTclustered gi|470521750|ref|XM_004353713.1| 1257118 g72312 i0 100 0.107692307692308 28 0 11 0 190 217 1560 1587 Acanthamoeba castellanii str. Neff SAM domain (Sterile alpha motif) domain containing protein (ACA1_272600), partial mRNA blastn 28 52.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
2731174 2731174 PRJNA1067370_P_NODE_14823_length_479_cov_2.352217_g14276_i0 PRJNA1067370 14823 479 2.352217 11.26711943 Vannella sp. KDN1 2081467 Discosea other_Eukaryota 767 0   NTclustered gi|1770511914|dbj|LC368142.1| 2081467 g14276 i0 95.652 95.2901878914405 483 11 100 9 1 479 1670 1194 Vannella sp. KDN1 gene for 18S ribosomal RNA, partial sequence blastn 45644 767 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. KDN1
8666372 8666372 PRJNA1067370_P_NODE_116767_length_233_cov_2.068750_g116218_i0 PRJNA1067370 116767 233 2.06875 4.8201875 Vannella 95228 Discosea other_Eukaryota 403 4.9999999999999985e-108   NTclustered gi|399764213|gb|JQ271724.1| 1215628 g116218 i0 97.854 90.4420600858369 233 5 100 0 1 233 364 132 Vannella sp. ACN1 18S ribosomal RNA gene, partial sequence blastn 21073 403 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. ACN1
10384072 10384072 PRJNA1067370_P_NODE_32649_length_344_cov_4.332103_g32101_i0 PRJNA1067370 32649 344 4.332103 14.90243432 Gocevia fonbrunei 1078849 Discosea other_Eukaryota 431 3.58e-116   NTclustered gi|345452576|gb|JF694306.1| 1078849 g32101 i0 89.275 99.0406976744186 345 35 100 2 1 344 614 271 Gocevia fonbrunei strain ATCC 50196 clone 1 actin gene, partial cds blastn 34070 431 1 Eukaryota Amoebozoa   Discosea   Himatismenida Goceviidae Gocevia Gocevia fonbrunei
10384095 10384095 PRJNA1067370_P_NODE_35269_length_334_cov_3.000000_g34721_i0 PRJNA1067370 35269 334 3 10.02 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 270 7.99e-68   NTclustered gi|470442906|ref|XM_004339540.1| 1257118 g34721 i0 84.364 19.8502994011976 275 43 82 0 1 275 294 20 Acanthamoeba castellanii str. Neff 60S ribosomal protein, putative (ACA1_063390), partial mRNA blastn 6630 270 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
11659129 11659129 PRJNA1067370_P_NODE_103610_length_244_cov_0.900585_g103061_i0 PRJNA1067370 103610 244 0.900585 2.1974274 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 143 1.27e-29   NTclustered gi|470420395|ref|XM_004337241.1| 1257118 g103061 i0 83.553 18.1475409836066 152 25 62 0 93 244 2422 2271 Acanthamoeba castellanii str. Neff eukaryotic translation elongation factor 2, putative (ACA1_220140), partial mRNA blastn 4428 143 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
11659421 11659421 PRJNA1067370_P_NODE_33550_length_341_cov_1.149254_g33002_i0 PRJNA1067370 33550 341 1.149254 3.91895614 Paravannella minima 1443144 Discosea other_Eukaryota 619 7.039999999999999e-173   NTclustered gi|571331049|gb|KF895376.1| 1443144 g33002 i0 99.413 102.504398826979 341 2 100 0 1 341 246 586 Paravannella minima strain CCAP 1533/1 clone 1 actin gene, partial cds blastn 34954 619 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Paravannella Paravannella minima
11659467 11659467 PRJNA1067370_P_NODE_38930_length_322_cov_2.164659_g38382_i0 PRJNA1067370 38930 322 2.164659 6.97020198 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 204 7.879999999999999e-48   NTclustered gi|470529917|ref|XM_004368096.1| 1257118 g38382 i0 80.451 82.5403726708075 266 52 83 0 51 316 422 157 Acanthamoeba castellanii str. Neff ribosomal protein S17, putative (ACA1_292890), partial mRNA blastn 26578 204 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
18032835 18032835 PRJNA1067370_P_NODE_7815_length_643_cov_2.128070_g7290_i0 PRJNA1067370 7815 643 2.12807 13.6834901 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 1057 0   NTclustered gi|659103845|gb|KJ569729.1| 1512276 g7290 i0 97.872 90.5847589424572 611 13 95 0 33 643 1 611 Cochliopodium kieliense isolate 2 cytochrome c oxidase subunit I (COI) gene, partial cds; mitochondrial blastn 58246 1057 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
18032970 18032970 PRJNA1067370_P_NODE_935_length_1541_cov_6.269074_g718_i0 PRJNA1067370 935 1541 6.269074 96.60643034 Vannella septentrionalis 197531 Discosea other_Eukaryota 261 2.42e-64   NTclustered gi|300078499|gb|GU001161.1| 197531 g718 i0 76.493 19.879299156392 536 92 34 27 147 673 1785 2295 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 30634 261 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
19306180 19306180 PRJNA1067370_P_NODE_106456_length_243_cov_0.905882_g105907_i0 PRJNA1067370 106456 243 0.905882 2.20129326 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 198 2.6599999999999998e-46   NTclustered gi|470439766|ref|XM_004339180.1| 1257118 g105907 i0 82.667 12.6296296296296 225 38 93 1 17 241 1275 1052 Acanthamoeba castellanii str. Neff Inositol3-phosphate synthase (ACA1_058810), partial mRNA blastn 3069 198 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
20581954 20581954 PRJNA1067370_P_NODE_3557_length_918_cov_1.610651_g3121_i0 PRJNA1067370 3557 918 1.610651 14.78577618 Paramoeba branchiphila 308475 Discosea other_Eukaryota 656 0   NTclustered gi|226347442|gb|FJ807261.1| 308475 g3121 i0 80.783 82.0610021786492 843 156 92 6 78 917 1072 233 Neoparamoeba branchiphila strain AMOP1 elongation factor 1 alpha gene, partial cds blastn 75332 656 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba branchiphila
21415357 21415357 PRJNA1067370_P_NODE_9377_length_591_cov_3.424710_g8843_i0 PRJNA1067370 9377 591 3.42471 20.2400361 Cochliopodium 313557 Discosea other_Eukaryota 774 0   NTclustered gi|59876024|gb|AY785057.1| 313998 g8843 i0 90.468 62.1912013536379 598 41 99 15 4 591 723 132 Cochliopodium sp. strain Kiel 18S ribosomal RNA gene, partial sequence blastn 36755 774 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium sp. strain Kiel
23132934 23132934 PRJNA1067370_P_NODE_12319_length_521_cov_2.421875_g11773_i0 PRJNA1067370 12319 521 2.421875 12.61796875 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 843 0   NTclustered gi|659103926|gb|KJ569726.1| 1512276 g11773 i0 95.817 65.5930902111324 526 15 100 7 1 521 48 571 Cochliopodium kieliense clone 9605 18S ribosomal RNA gene, partial sequence blastn 34174 843 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
23133085 23133085 PRJNA1067370_P_NODE_30359_length_354_cov_1.010676_g29811_i0 PRJNA1067370 30359 354 1.010676 3.57779304 Paravannella minima 1443144 Discosea other_Eukaryota 379 1.35e-100   NTclustered gi|571331049|gb|KF895376.1| 1443144 g29811 i0 86.246 98.0649717514124 349 48 99 0 4 352 578 230 Paravannella minima strain CCAP 1533/1 clone 1 actin gene, partial cds blastn 34715 379 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Paravannella Paravannella minima
23133296 23133296 PRJNA1067370_P_NODE_60759_length_279_cov_0.902913_g60210_i0 PRJNA1067370 60759 279 0.902913 2.51912727 Cochliopodium minus 313997 Discosea other_Eukaryota 183 8.73e-42   NTclustered gi|330902895|gb|JF298272.1| 313997 g60210 i0 81.013 18.5519713261649 237 39 84 5 46 279 722 955 Cochliopodium minus clone 5207 actin gene, partial cds blastn 5176 183 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
23133362 23133362 PRJNA1067370_P_NODE_7499_length_654_cov_5.774527_g6976_i0 PRJNA1067370 7499 654 5.774527 37.76540658 Cochliopodium kieliense 1512276 Discosea other_Eukaryota 929 0   NTclustered gi|659103926|gb|KJ569726.1| 1512276 g6976 i0 93.407 56.2522935779817 637 27 95 10 1 624 2003 1369 Cochliopodium kieliense clone 9605 18S ribosomal RNA gene, partial sequence blastn 36789 929 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium kieliense
24407151 24407151 PRJNA1067370_P_NODE_98600_length_246_cov_0.890173_g98051_i0 PRJNA1067370 98600 246 0.890173 2.18982558 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 156 1.65e-33   NTclustered gi|470526398|ref|XM_004356698.1| 1257118 g98051 i0 78.947 10.979674796748 228 48 93 0 7 234 109 336 Acanthamoeba castellanii str. Neff cytochrome c, putative (ACA1_175250), partial mRNA blastn 2701 156 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;