RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1067370" and tax_phylum = "Chloroflexota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1067370 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1013282 1013282 PRJNA1067370_P_NODE_46341_length_306_cov_0.991416_g45793_i0 PRJNA1067370 46341 306 0.991416 3.03373296 Roseiflexus 120961 Bacteria Bacteria 276 1.5599999999999998e-69   NTclustered gi|470481958|ref|NR_076505.1| 357808 g45793 i0 83.607 311.356209150327 305 39 98 11 1 299 1056 757 Roseiflexus sp. RS-1 strain RS-1 23S ribosomal RNA, complete sequence blastn 95275 278 0.992805755395683 Bacteria   Bacillati Chloroflexota Chloroflexia Chloroflexales Roseiflexaceae Roseiflexus Roseiflexus sp. RS-1
11659443 11659443 PRJNA1067370_P_NODE_35910_length_332_cov_1.702703_g35362_i0 PRJNA1067370 35910 332 1.702703 5.65297396 Chloroflexota bacterium 2026724 Bacteria Bacteria 147 1.39e-30   NTclustered gi|1985684846|gb|CP069394.1| 2026724 g35362 i0 76.066 158.228915662651 305 60 90 12 34 332 1474600 1474897 Chloroflexi bacterium strain ZRK35 chromosome, complete genome blastn 52532 147 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;