RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1067370" and tax_phylum = "Blastocladiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1067370 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4007540 4007540 PRJNA1067370_P_NODE_74604_length_258_cov_1.135135_g74055_i0 PRJNA1067370 74604 258 1.135135 2.9286483 Blastocladiella sp. 2169676 Fungi Fungi 132 2.9300000000000003e-26   NTclustered gi|1866582610|gb|MT730785.1| 2169676 g74055 i0 85.827 47.6589147286822 127 15 68 3 133 258 3987 3863 Blastocladiella sp. isolate JEL0703 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 12296 132 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella sp.
13766522 13766522 PRJNA1067370_P_NODE_14811_length_479_cov_6.066502_g14264_i0 PRJNA1067370 14811 479 6.066502 29.05854458 Opisthokonta 33154 Fungi Fungi 453 1.09e-122   NTclustered gi|117422539|gb|EF064246.1| 4808 g14264 i0 85.484 34.384133611691 434 63 91 0 45 478 97 530 Blastocladiella emersonii elongation factor alpha-like protein mRNA, complete cds blastn 16470 453 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella emersonii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;