RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1067370" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1067370 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4007103 4007103 PRJNA1067370_P_NODE_14224_length_489_cov_1.581731_g13677_i0 PRJNA1067370 14224 489 1.581731 7.73466459 Thalassiosira pseudonana 35128 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.048   NTclustered gi|224000530|ref|XM_002289902.1| 296543 g13677 i0 100 0.0572597137014315 28 0 6 0 74 101 1222 1195 Thalassiosira pseudonana CCMP1335 hypothetical protein (HSF2), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Thalassiosiraceae Thalassiosira Thalassiosira pseudonana
10384060 10384060 PRJNA1067370_P_NODE_30749_length_352_cov_1.347670_g30201_i0 PRJNA1067370 30749 352 1.34767 4.7437984 Thalassiosira pseudonana 35128 SAR_Eukaryotes SAR_Eukaryotes 206 2.41e-48   NTclustered gi|224000066|ref|XM_002289670.1| 296543 g30201 i0 77.778 55.6789772727273 342 70 96 6 1 339 115 453 Thalassiosira pseudonana CCMP1335 RS9, ribosomal protein 9 (RS9), mRNA blastn 19599 206 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Thalassiosiraceae Thalassiosira Thalassiosira pseudonana
16757873 16757873 PRJNA1067370_P_NODE_56474_length_285_cov_1.452830_g55925_i0 PRJNA1067370 56474 285 1.45283 4.1405655 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 322 1.82e-83   NTclustered gi|657012367|gb|KF302531.1| 2850 g55925 i0 87.063 24.719298245614 286 35 100 2 1 285 361 77 Phaeodactylum tricornutum clone C443 40S ribosomal protein mRNA, partial cds blastn 7045 322 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;